Travelling through conformational space: an approach for analyzing the conformational behaviour of flexible molecules (Q77455731)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

review article

1 reference

title

Travelling through conformational space: an approach for analyzing the conformational behaviour of flexible molecules (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

author name string

J Koca

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

publication date

1 January 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

Progress in Biophysics and Molecular Biology

5 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

volume

70

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

page(s)

137-173

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

Essential dynamics of proteins

5 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

A combination of driving method with simulated annealing to search conformational space

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformational analysis of a dinucleotide photodimer with the aid of the genetic algorithm

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformational sampling using high-temperature molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Calcium binding to carbohydrates. Crystal structure of a hydrated calcium bromide complex of lactose

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Dynamics of ligand binding to heme proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Validation of two conformational searching methods applied to sucrose: simulation of NMR and chiro-optical data

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Computational studies of ligand diffusion in globins: I. Leghemoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

An analysis of the conformational paths of citrate synthase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Travelling on the potential energy surfaces of carbohydrates: comparative application of an exhaustive systematic conformational search with an heuristic search.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

CICADA interface with AMBER. An application on oligonucleotides and their fragments.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Single-Coordinate-Driving Method Coupled with Simulated Annealing.An Efficient Tool To Search Conformational Space

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Tryptophan-47 rotational isomerization in variant-3 scorpion neurotoxin. A combination thermodynamic perturbation and umbrella sampling study

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Alpha/3(10)-helix transitions in alpha-methylalanine homopeptides: conformational transition pathway and potential of mean force.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Computer simulation of histo-blood group oligosaccharides: energy maps of all constituting disaccharides and potential energy surfaces of 14 ABH and Lewis carbohydrate antigens

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Molecular modelling of protein-carbohydrate interactions. Understanding the specificities of two legume lectins towards oligosaccharides

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Optimization by Simulated Annealing

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

A mathematical model of the logical structure of chemistry. A bridge between theoretical and experimental chemistry and a general tool for computer-assisted molecular design

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

A mathematical model of the logical structure of chemistry. A bridge between theoretical and experimental chemistry and a general tool for computer-assisted molecular design

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Potential energy hypersurface and molecular flexibility

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformational behavior of pheromones and analogues Part I. 3-methyl-2-buten-1-ol, 3,3,6-trimethyl-1, 5- heptadien-4-ol and 2-methyl-6-methylene-2,7-octadien-4- on

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformational behavior of insect pheromones and analogues. Part II

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformational behavior and flexibility of terminally blocked alanine di- and tripeptides

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformational analysis and flexibility of carbohydrates using the CICADA approach with MM3

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Conformation studies of 13 trinucleoside diphosphates by 360 MHz PMR spectroscopy. A bulged base conformation. I. Base protons and H1' protons

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

D-CICADA: A software for conformational PES elucidation on network of workstations

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Equation of State Calculations by Fast Computing Machines

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Reaction path study of ligand diffusion in proteins: application of the self penalty walk (SPW) method to calculate reaction coordinates for the motion of CO through leghemoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

An efficient newton-like method for molecular mechanics energy minimization of large molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Flexibility plot of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Structure of ricin B-chain at 2.5 A resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Normal-mode analysis suggests important flexibility between the two N-terminal domains of CD4 and supports the hypothesis of a conformational change in CD4 upon HIV binding

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Structure of a legume lectin with an ordered N-linked carbohydrate in complex with lactose

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Refined structure of Escherichia coli heat-labile enterotoxin, a close relative of cholera toxin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

13C-NMR of ribosyl ApApA, ApApG and ApUpG.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

On the interpretation of biochemical data by molecular dynamics computer simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

Beta-sheet coil transitions in a simple polypeptide model

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2898%2900029-7

7 January 2021

10.1016/S0079-6107(98)00029-7

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9785960%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

1 reference