One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements (Q77772073)

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8 December 2019

title

One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements (English)

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8 December 2019

author name string

N Shimamoto

series ordinal

1

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8 December 2019

language of work or name

English

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publication date

1 May 1999

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Journal of Biological Chemistry

8 December 2019

published in

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8 December 2019

volume

274

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8 December 2019

issue

22

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8 December 2019

page(s)

15293-15296

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RNA polymerase as a molecular motor

8 December 2019

cites work

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Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

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Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA.

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Accurate scanning of the BssHII endonuclease in search for its DNA cleavage site

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Visualization of single molecules of RNA polymerase sliding along DNA.

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One-dimensional diffusion of Escherichia coli DNA-dependent RNA polymerase: a mechanism to facilitate promoter location

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Direct visualization of dynamic protein-DNA interactions with a dedicated atomic force microscope

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The lac repressor-operator interaction. 3. Kinetic studies

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On the promoter complex formation rate of E. coli RNA polymerases with T7 phage DNA.

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Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence

21 January 2018

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Does the specific recongnition of DNA by the restriction endonucleaseEcoRI involve a linear diffusion step? Investigation of the processivity of theEcoRI endonuclease

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A Fast and Accurate Enzyme-Linked Immunosorbent Assay for the Determination of the DNA Cleavage Activity of Restriction Endonucleases

21 January 2018

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Sliding and intermolecular transfer of the lac repressor: kinetic perturbation of a reaction intermediate by a distant DNA sequence

21 January 2018

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Salt dependence of the kinetics of the lac repressor-operator interaction: role of nonoperator deoxyribonucleic acid in the association reaction

21 January 2018

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

21 January 2018

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Association kinetics with coupled diffusion III. Ionic-strength dependence of the lac repressor-operator association

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Analysis of ion concentration effects of the kinetics of protein-nucleic acid interactions. Application to lac repressor-operator interactions

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Lac repressor-operator interaction: DNA length dependence.

21 January 2018

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Comparison of the DNA association kinetics of the Lac repressor tetramer, its dimeric mutant LacIadi, and the native dimeric Gal repressor

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Facilitated diffusion of the EcoRI DNA methyltransferase is described by a novel mechanism

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Contribution of facilitated diffusion and processive catalysis to enzyme efficiency: implications for the EcoRI restriction-modification system

21 January 2018

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Kinetic studies on Cro repressor-operator DNA interaction

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Processive action of T4 endonuclease V on ultraviolet-irradiated DNA

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How Lac repressor finds lac operator in vitro

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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

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A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

21 January 2018

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

21 January 2018

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Use of surface plasmon resonance to probe the equilibrium and dynamic aspects of interactions between biological macromolecules.

21 January 2018

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Substrate-length-dependent activities of human immunodeficiency virus type 1 integrase in vitro: differential DNA binding affinities associated with different lengths of substrates

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DNA intersegment transfer, how steroid receptors search for a target site

21 January 2018

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21 January 2018

Identifiers

DOI

10.1074/JBC.274.22.15293

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10336412%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

1 reference