A critical cross-validation of high throughput structural binding prediction methods for pMHC (Q83298882)

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20 January 2020

title

A critical cross-validation of high throughput structural binding prediction methods for pMHC (English)

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20 January 2020

2

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20 January 2020

author name string

Bernhard Knapp

series ordinal

1

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20 January 2020

Sophie Frantal

series ordinal

3

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20 January 2020

Wolfgang Schreiner

series ordinal

4

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20 January 2020

publication date

5 February 2009

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Journal of Computer - Aided Molecular Design

20 January 2020

published in

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20 January 2020

volume

23

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20 January 2020

issue

5

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20 January 2020

page(s)

301-307

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Molecular dynamics study of a complex between the human histocompatibility antigen HLA-A2 and the IMP58-66 nonapeptide from influenza virus matrix protein

20 January 2020

cites work

1 reference

12 December 2020

A structural basis for the selection of dominant alphabeta T cell receptors in antiviral immunity

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Single MHC Mutation Eliminates Enthalpy Associated with T Cell Receptor Binding

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Further development and validation of empirical scoring functions for structure-based binding affinity prediction

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Predicting proteasomal cleavage sites: a comparison of available methods

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Side chain substitution benchmark for peptide/MHC interaction.

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Covalent assembly of a soluble T cell receptor-peptide-major histocompatibility class I complex

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The meaning and use of the area under a receiver operating characteristic (ROC) curve

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Prediction of T-cell epitope

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Large-scale molecular dynamics simulations of HLA-A*0201 complexed with a tumor-specific antigenic peptide: can the alpha3 and beta2m domains be neglected?

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12 December 2020

Magnitude of structural changes of the T-cell receptor binding regions determine the strength of T-cell antagonism: molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide

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12 December 2020

A graph-theory algorithm for rapid protein side-chain prediction

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A semiempirical free energy force field with charge-based desolvation

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IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models

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12 December 2020

Protein-ligand docking: current status and future challenges

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Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach

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The Proof and Measurement of Association between Two Things

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12 December 2020

Immunoinformatics comes of age

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12 December 2020

A community resource benchmarking predictions of peptide binding to MHC-I molecules

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12 December 2020

Comparison between computational alanine scanning and per-residue binding free energy decomposition for protein-protein association using MM-GBSA: application to the TCR-p-MHC complex.

1 reference

12 December 2020

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

1 reference

12 December 2020

In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion

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12 December 2020

10.1007/S10822-009-9259-2

Identifiers

DOI

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journals/jcamd/KnappOFS09

20 January 2020

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

1 reference