Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types (Q92509298)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395879%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types (English)

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30 April 2020

1

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30 April 2020

Bin Chen

2

1 reference

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30 April 2020

Dvir Aran

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395879%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

Laura J Van't Veer

7

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30 April 2020

Atul Butte

8

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30 April 2020

author name string

J Charalel

4

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30 April 2020

C Yau

5

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30 April 2020

D M Wolf

6

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30 April 2020

T Goldstein

9

1 reference

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30 April 2020

M Sirota

10

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30 April 2020

publication date

8 August 2019

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30 April 2020

published in

Nature Communications

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30 April 2020

volume

10

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30 April 2020

issue

1

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30 April 2020

page(s)

3574

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describes a project that uses

30 April 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/6687785

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Colorectal Cancer Consensus Molecular Subtypes Translated to Preclinical Models Uncover Potentially Targetable Cancer Cell Dependencies.

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Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma.

11 February 2021

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Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma

11 February 2021

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Developmental pathways associated with cancer metastasis: Notch, Wnt, and Hedgehog

11 February 2021

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Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles

11 February 2021

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Integrated genomic characterization of oesophageal carcinoma

11 February 2021

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A cloud-based workflow to quantify transcript-expression levels in public cancer compendia

11 February 2021

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Comprehensive comparison of molecular portraits between cell lines and tumors in breast cancer

11 February 2021

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MIA PaCa-2 and PANC-1 - pancreas ductal adenocarcinoma cell lines with neuroendocrine differentiation and somatostatin receptors

11 February 2021

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Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

11 February 2021

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The Molecular Signatures Database (MSigDB) hallmark gene set collection

11 February 2021

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Breast cancer intrinsic subtype classification, clinical use and future trends

11 February 2021

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Systematic pan-cancer analysis of tumour purity

11 February 2021

1 reference

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The Molecular Taxonomy of Primary Prostate Cancer

11 February 2021

1 reference

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The consensus molecular subtypes of colorectal cancer

11 February 2021

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Virtual microdissection identifies distinct tumor- and stroma-specific subtypes of pancreatic ductal adenocarcinoma.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Genomic Classification of Cutaneous Melanoma

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Integrated genomic characterization of papillary thyroid carcinoma

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Comprehensive molecular profiling of lung adenocarcinoma

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Comprehensive molecular characterization of gastric adenocarcinoma

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Inferring tumour purity and stromal and immune cell admixture from expression data

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Evaluating cell lines as tumour models by comparison of genomic profiles

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Comprehensive molecular characterization of clear cell renal cell carcinoma

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Integrated genomic characterization of endometrial carcinoma

11 February 2021

1 reference

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Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

The clinical relevance of cancer cell lines.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Developmental pathways in colon cancer: crosstalk between WNT, BMP, Hedgehog and Notch

11 February 2021

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Comprehensive molecular portraits of human breast tumours

11 February 2021

1 reference

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Comprehensive genomic characterization of squamous cell lung cancers

11 February 2021

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Absolute quantification of somatic DNA alterations in human cancer

11 February 2021

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11 February 2021

Cell lines battle cancer

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Pathways involved in Drosophila and human cancer development: the Notch, Hedgehog, Wingless, Runt, and Trithorax pathway

11 February 2021

1 reference

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Subtypes of pancreatic ductal adenocarcinoma and their differing responses to therapy

11 February 2021

1 reference

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Nearest template prediction: a single-sample-based flexible class prediction with confidence assessment

11 February 2021

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Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Mucin impedes cytotoxic effect of 5-FU against growth of human pancreatic cancer cells: overcoming cellular barriers for therapeutic gain

11 February 2021

1 reference

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The NCI60 human tumour cell line anticancer drug screen

11 February 2021

1 reference

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Adjusting batch effects in microarray expression data using empirical Bayes methods

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

11 February 2021

1 reference

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Identification of molecular subtypes of glioblastoma by gene expression profiling.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

Human pancreatic adenocarcinoma line Capan-1 in tissue culture and the nude mouse: morphologic, biologic, and biochemical characteristics

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6687785

10.1038/S41467-019-11415-2

11 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395879%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31395879%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference