Wikidata:WikiProject Haplogroups

Current goal for this project is to store values used by Template:Infobox haplogroup (Q10562645) to Wikidata.

Examples

Example articles

• w:en:Haplogroup N (mtDNA) → Haplogroup N (Q118710)

Other

• w:en:Haplogroup L (mtDNA) → Macro-haplogroup L (Q3274906)
• w:en:Haplogroup L1 (mtDNA) → Haplogroup L1 (Q122595)
• w:en:Haplogroup L2 (mtDNA) → Haplogroup L2 (Q3629931)
• w:en:Haplogroup L3 (mtDNA) → Haplogroup L3 (Q1584176)
• w:en:Haplogroup M (mtDNA) → Haplogroup M (Q1584179)

Properties

Properties used to describe individual's haplogroup

Title	ID	Data type	Description	Examples	Inverse
mtDNA haplogroup	P4425	Item	mitochondrial DNA haplogroup: mitochondrial DNA haplogroup of a person or organism	Mummy Juanita <mtDNA haplogroup> Haplogroup A	-
Y-DNA Haplogroup	P4426	Item	Y-DNA haplogroup and human Y-chromosome DNA haplogroup: Y-DNA haplogroup of a person or organism	Charles Darwin <Y-DNA Haplogroup> Haplogroup R1b	-

Properties used to describe haplogroup characteristics.

Title	ID	Data type	Description	Examples	Inverse
instance of	P31	Item	instance of: that class of which this subject is a particular example and member; different from P279 (subclass of); for example: K2 is an instance of mountain; volcano is a subclass of mountain (and an instance of volcanic landform)	Haplogroup N <instance of> Human mitochondrial DNA haplogroup	-
taxon range map image	P181	Commons media file	range, habitat and map: range map of a taxon	Adenoviridae <taxon range map image> Distribution.dysderidae.1.png	-
place of birth	P19	Item	place of birth, maternity hospital and unknown birth place: most specific known (e.g. city instead of country, or hospital instead of city) birth location of a person, animal or fictional character	Julius Caesar <place of birth> Rome	-
date of birth	P569	Point in time	date of birth: date on which the subject was born	Jude Law <date of birth> 29 December 1972	-
earliest date	P1319	Point in time	earliest date at which an event could have happened. Use as qualifier for other date properties	date of birth of Jesus <earliest date> 0006	-
latest date	P1326	Point in time	unknown: latest possible time that something could have occurred. Use as qualifier for other date properties	date of birth of Jesus <latest date> 0004	-
follows	P155	Item	follows: immediately prior item in a series of which the subject is a part, preferably use as qualifier of P179 [if the subject has replaced the preceding item, e.g. political offices, use "replaces" (P1365)]	Star Wars: Episode V – The Empire Strikes Back <follows> Star Wars: Episode IV – A New Hope	followed by
followed by	P156	Item	followed by: immediately following item in a series of which the subject is a part, preferably use as qualifier of P179 [if the subject has been replaced, e.g. political offices, use "replaced by" (P1366)]	March <followed by> April	follows
described by source	P1343	Item	source of information: work where this item is described	Vladimir K. Zworykin <described by source> Brockhaus Enzyklopädie (19 ed.)	-
short name	P1813	Monolingual text	abbreviation: short name of a place, organisation, person, journal, wikidata property, etc. Used by some Wikipedia templates.	Orange County <short name> Orange	-
has part(s)	P527	Item	has part, consist of and meronymy: part of this subject; inverse property of "part of" (P361). See also "has parts of the class" (P2670).	United States Congress <has part(s)> United States Senate and United States House of Representatives	part of
does not have part	P3113	Item	omission: expected part that the item does not have (for qualities, use P6477)	Franklin County State Airport <does not have part> control tower	-
has part(s) of the class	P2670	Item	has parts of class: the subject has one or more parts of the object class	University of Cambridge <has part(s) of the class> college of the University of Cambridge	-
different from	P1889	Item	different from: item that is different from another item, with which it may be confused	Kowalski <different from> Kowalski	different from
short name	P1813	Monolingual text	abbreviation: short name of a place, organisation, person, journal, wikidata property, etc. Used by some Wikipedia templates.	Orange County <short name> Orange	-
locator map image	P242	Commons media file	locator map and map: geographic map image which highlights the location of the subject within some larger entity	Prague <locator map image> 2004 Praha.png	-
RefSeq genome ID	P2249	External identifier	ID in the RefSeq Genome database	Chlamydia trachomatis D/UW-3/CX chromosome <RefSeq genome ID> NC_000117	-
owned by	P127	Item	proprietor, property and owned by: owner of the subject	Choupette <owned by> Karl Lagerfeld	owner of

Alternative properties

Not in use.

Title	ID	Data type	Description	Examples	Inverse
detail map	P1621	Commons media file	map: map containing details about the entire location	Sicily <detail map> Map of region of Sicily, Italy, with provinces-en.svg	-
next lower rank	P3729	Item	rank: lower rank or level in a ranked hierarchy like sport league, military ranks. If there are several possible, list each one and qualify with "criterion used" (P1013), avoid using ranks and date qualifiers. For sports leagues/taxa, use specific properties instead.	General of the Army <next lower rank> General of the Armies of the United States	next higher rank
next higher rank	P3730	Item	rank: higher rank or level in a ranked hierarchy like sport league, military ranks. If there are several possible, list each one and qualify with "criterion used" (P1013), avoid using ranks and date qualifiers. For sports leagues/taxa, use specific properties instead.	cardinal <next higher rank> pope	next lower rank
biological variant of	P3433	Item	a variant of a physical biological entity (e.g., gene sequence, protein sequence, epigenetic mark)	BRAF V600E <biological variant of> BRAF	-
endemic to	P183	Item	endemism and endemic species: sole location or habitat type where the taxon lives	Tournefortia acuminata <endemic to> Réunion	-

SPARQL

mtDNA

Listing all items which has statement instance of (P31)Human mitochondrial DNA haplogroup (Q1356230)

#mtDNA Haplogroups
SELECT ?item ?itemLabel ?p569 ?p19Label ?p155Label ?p156Label
WHERE 
{
  ?item wdt:P31 wd:Q1356230.
  OPTIONAL { ?item wdt:P569 ?p569 } #date of birth
  OPTIONAL { ?item wdt:P19 ?p19 } #place of birth
  OPTIONAL { ?item wdt:P155 ?p155 } #follows
  OPTIONAL { ?item wdt:P156 ?p156 } #followed by
  
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!

Y-DNA

Listing all items which has statement instance of (P31)human Y-chromosome DNA haplogroup (Q428875)

#Y-DNA Haplogroups
SELECT ?item ?itemLabel ?p569 ?p19Label ?p155Label ?p156Label
WHERE 
{
  ?item wdt:P31 wd:Q428875.
  OPTIONAL { ?item wdt:P569 ?p569 } #date of birth
  OPTIONAL { ?item wdt:P19 ?p19 } #place of birth
  OPTIONAL { ?item wdt:P155 ?p155 } #follows
  OPTIONAL { ?item wdt:P156 ?p156 } #followed by
  
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!

Statistics

mtDNA statistics

	Number of haplogroups	Version	Date	Source
PhyloTree	～5,500	mtDNA tree Build 17	2016-02-18	[1]
haplogroup.org	5,182	-	2018-01-06	[2]
Wikidata	143	-	2018-01-06	[3]
English Wikipedia	47	-	2018-01-06	[4]
(Mathematically possible patterns)*	∼3.4 × 109975	-	-	[5]

^*Simply calculated from 4^16,569 with disregarding indel. 16,569 bases (length of rCRS) are lined up in a row. Each base is one of four (A, T, C, or G).

Y-DNA statistics

	Number of haplogroups	Version	Date	Source
Y Chromosome Consortium	153	-	2002	[6]
Karafet et al. 2008	311	-	2008	[7]
Wikidata	77	-	2018-01-06	[8]
English Wikipedia	95	-	2018-01-06	[9]
(Mathematically possible patterns)*	∼3.4 × 1032511239	-	-	[10]

^*Calculated from 4^54,000,000. 54 million bases (rough length of human NRY[11]) are lined up in a row. Each base is one of four (A, T, C, or G).

Tree

Followings are current status of haplogroup item pages in Wikidata.

To show haplogroup item in the tree (which is generated by Module:Haplogroup, derivative version of Template:Tree), it's needed to register the followed by (P156) statement at the "parent" haplogroup item page.

For example, to include Haplogroup L4a in the tree, it's needed to register the statement followed by (P156)Haplogroup L4a (Q3510066) in the parent haplogroup Haplogroup L4 item page.

Tree structure is generated by tracking "followed by (P156)" from the root item. If item page has link to Wikipedia (of your setting language), Wikimedia Commons, or haplogroup.org, it is shown next to each haplogroup name. (Do not use haplogroup.org as source but use it to find original sources.)

If there are other data (for example, "date of birth (P569)", "place of birth (P19)", or "locator map image (P242)"), it is shown by clicking [Show detail] button at the top-left of the tree.

mtDNA tree

Starting from mitochondrial Eve (Q221674), tracking through followed by (P156)

{{ #invoke:Haplogroup | main | firstItemId = Q221674 | maxdepth = 25}}

Y-DNA tree

Starting from Y-chromosomal Adam (Q351265), tracking through followed by (P156)

{{ #invoke:Haplogroup | main | firstItemId = Q351265 | maxdepth = 25}}

templates with Wikidata support

Template:Infobox haplogroup (Q10562645)

• fiwiki (and actual infobox configuration page: w:fi:module:Fr:Infobox/haploryhmä)

Data sources

mtDNA

• phylotree.org - mtDNA tree Build 17 (18 Feb 2016)- mtDNA tree Build 17 (18 Feb 2016) (Q45008912)
  • Mannis van Oven on the Human Mitochondrial DNA Phylogeny (June 2011) - Interview with phylotree.org developer
• haplogroup.org - do not use haplogroup.org as source but use it to find original sources.

Y-DNA

• isogg.org Y-DNA haplogroup tree - ISOGG Y-DNA Haplogroup Tree (Q45105871)
• YFull YTree - do not use YTree as source but use it to see well structured tree.