Wikidata:WikiProject Medicine/Properties

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Properties

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Items and Queries

Literature

Lists

Introduction

Properties are used to assign statements to items. For example one of the symptoms of dengue fever (Q30953) is headache (Q86). To add this statement the property symptoms and signs (P780) is used. Anybody can suggest new properties in the subsections of Wikidata:Property proposal. Statements are used to centralize infobox information and add additional information to an item.

List of existing properties

The following is a list of existing properties.

Diseases

Title	ID	Data type	Description	Examples	Inverse
MeSH descriptor ID	P486	External identifier	identifier for Descriptor or Supplementary concept in the Medical Subject Headings controlled vocabulary	systemic lupus erythematosus <MeSH descriptor ID> D008180	-
OMIM ID	P492	External identifier	disease, gene and phenotype: Online "Mendelian Inheritance in Man" catalogue codes for diseases, genes, or phenotypes	Huntington's disease <OMIM ID> 143100	-
ICD-9 ID	P493	External identifier	International Statistical Classification of Diseases and Related Health Problems: identifier in the ICD catalogue codes for diseases – Version 9	influenza <ICD-9 ID> 487	-
ICD-10	P494	External identifier	identifier in the ICD catalogue codes for diseases - Version 10	influenza <ICD-10> J10	-
DiseasesDB	P557	External identifier	identifier sourced on the Diseases Database	myocardial infarction <DiseasesDB> 8664	-
ICD-O	P563	External identifier	International Classification of Diseases for Oncology	Warthin's tumor <ICD-O> 8561/0	-
MedlinePlus ID	P604	External identifier	health information from U.S. government agencies, and health-related organizations	myocardial infarction <MedlinePlus ID> 000195	-
PubMed Health	P653	External identifier	identifier for a physiological condition, in the PubMed Health website	myocardial infarction <PubMed Health> 0001246	-
DSM-IV classification	P663	External identifier	DSM-IV codes: identifier for a mental disorder in the 4th edition of Diagnostic and Statistical Manual of Mental Disorders	dyscalculia <DSM-IV classification> 315.1	-
ICPC 2 ID	P667	String	International Classification of Primary Care: classification method for primary care encounters	allergy <ICPC 2 ID> A92	-
GeneReviews ID	P668	External identifier	collection of peer-reviewed articles that describe specific gene-releated diseases	multiple sclerosis <GeneReviews ID> NBK1316	-
MeSH tree code	P672	External identifier	Medical Subject Headings (MeSH) codes are an index and thesaurus for the life sciences (≠ MeSH ID, P486)	aorta <MeSH tree code> A07.231.114.056	-
eMedicine ID	P673	External identifier	identifier in the online clinical medical knowledge base	epilepsy <eMedicine ID> 1184846	-
Disease Ontology ID	P699	External identifier	identifier in the Disease Ontology database	neuroblastoma <Disease Ontology ID> 769	-
symptoms and signs	P780	Item	symptom: possible symptoms or signs of a medical condition	meningitis <symptoms and signs> headache	-
has cause	P828	Item	cause: underlying cause, thing that ultimately resulted in this effect	bone fracture <has cause> stress fracture	has effect
medical examination	P923	Item	physical examination and medical diagnosis: examinations that might be used to diagnose and/or prognose the medical condition	bone fracture <medical examination> medical radiography	-
possible treatment	P924	Item	medical treatment: health treatment used to resolve or ameliorate a medical condition	bone fracture <possible treatment> intramedullary rod	-
disease transmission process	P1060	Item	pathogen transmission: process by which a pathogen is transmitted, equivalent to "transmitted by" in the relation ontology http://purl.obolibrary.org/obo/RO_0002451	tuberculosis <disease transmission process> airborne transmission	-
prevalence	P1193	Quantity	prevalence: portion in percent of a population with a given disease or disorder	Alzheimer's disease <prevalence> 0.0505	-
incidence	P2844	Quantity	incidence: probability of occurrence of a given condition in a population within a specified period of time	hepatitis C <incidence> 0.5 cases per 100000 person-years	-
National Cancer Institute ID	P1395	External identifier	identifier at www.cancer.gov	breast cancer <National Cancer Institute ID> breast	-
Patientplus ID	P1461	External identifier	identifier of disease at Patient UK	Asperger syndrome <Patientplus ID> aspergers-syndrome	-
Orphanet ID	P1550	External identifier	rare disease and orphan drug: identifier in the Orpha.net database (without ORPHA prefix)	pneumocystosis <Orphanet ID> 723	-
UBERON ID	P1554	External identifier	identifier from UBERON ontology (without prefix)	head <UBERON ID> 0000033	-
MalaCards ID	P1583	External identifier	identifier in the Malacards database of diseases	Huntington's disease <MalaCards ID> huntingtons_disease	-
number of cases	P1603	Quantity	number of infected: cumulative number of confirmed, probable and suspected occurrences	Western African Ebola virus epidemic <number of cases> 13703	-
biosafety level	P1604	Item	biosafety level: level of the biocontainment precautions required to isolate dangerous biological agents	methicillin-resistant Staphylococcus aureus <biosafety level> biosafety level 2	-
has natural reservoir	P1605	Item	natural reservoir: host species for the pathogen in which it is endemic	Ebolavirus <has natural reservoir> Pteropodidae	natural reservoir of
natural reservoir of	P1606	Item	natural reservoir: pathogen of which this species is a long-term host	Pteropodidae <natural reservoir of> Ebolavirus	has natural reservoir
UniProt disease ID	P11430	External identifier	identifier for a disease in the UniProt database	Basilicata-Akhtar syndrome <UniProt disease ID> DI-05649	-

Anatomy

• Template:Infobox anatomy (Q5879630)

Title	ID	Data type	Description	Examples	Inverse
part of	P361	Item	part: object of which the subject is a part (if this subject is already part of object A which is a part of object B, then please only make the subject part of object A), inverse property of "has part" (P527, see also "has parts of the class" (P2670))	hypothalamus <part of> diencephalon	has part(s)
anatomical location	P927	Item	anatomical location: where in the body or cell does this feature lie or happen	retina bipolar cell <anatomical location> inner nuclear layer	-
Terminologia Anatomica 98 ID	P1323	External identifier	Terminologia Anatomica (1998 edition) human anatomical terminology identifier	tibia <Terminologia Anatomica 98 ID> A02.5.06.001	-
Foundational Model of Anatomy ID	P1402	External identifier	identifier for human anatomical terminology	parietal lobe <Foundational Model of Anatomy ID> 61826	-
ICD-10-PCS	P1690	External identifier	identifier in the ICD-10-PCS (Procedure Coding System, International Classification of Diseases, 10th revision)	digestive system surgery <ICD-10-PCS> 0D	-
operations and procedures key (OPS)	P1691	External identifier	official classification of operational procedures	digestive system surgery <operations and procedures key (OPS)> 5-42	-
ICD-9-CM	P1692	String	ICD-9-CM: identifier in the ICD adaption assigning diagnostic and procedure codes	digestive system surgery <ICD-9-CM> 42	-
Terminologia Embryologica	P1693	External identifier	standardized list of words used in the description of human embryologic and fetal structures	blastomer <Terminologia Embryologica> E7.0.1.2.0.0.2	-
Terminologia Histologica	P1694	External identifier	controlled vocabulary for use in cytology and histology	neuron <Terminologia Histologica> H2.00.06.1.00001	-
arterial supply	P2286	Item	artery: arterial supply of an anatomical structure	liver <arterial supply> hepatic artery proper	venous drainage
lymphatic drainage	P2288	Item	lymphatic system: lymphatic drainage of an anatomical structure	uterus <lymphatic drainage> Paraaortic lymph node and internal iliac lymph nodes	-
venous drainage	P2289	Item	vein: vein draining the anatomical structure	uterus <venous drainage> uterine vein	arterial supply
muscle origin	P3490	Item	muscle origin: the anatomic entity to which the beginning of a muscle is anchored	biceps femoris muscle <muscle origin> tuberosity of the ischium	-
muscle insertion	P3491	Item	muscle insertion: the anatomic entity to which the end of a muscle is anchored	biceps brachii <muscle insertion> radial tuberosity	-
anatomical branch of	P3261	Item	anatomical branch: main stem of this blood vessel, lymphatic vessel or nerve	brachiocephalic artery <anatomical branch of> aorta	has anatomical branch
has anatomical branch	P3262	Item	anatomical branch: branches of this blood vessel, lymphatic vessel or nerve	common carotid artery <has anatomical branch> external carotid artery	anatomical branch of

Nerves and brain

Title	ID	Data type	Description	Examples	Inverse
Interlex ID	P696	External identifier	identifier in the Interlex database (used to be Neurolex)	cone cell <Interlex ID> Sao1103104164	-
presynaptic connection	P925	Item	synapse: neuron connects on its presynaptic end to	retina bipolar cell <presynaptic connection> rod cell	postsynaptic connection
postsynaptic connection	P926	Item	synapse: neuron connects on its postsynaptic end to	retina bipolar cell <postsynaptic connection> retinal ganglion cell	presynaptic connection
activating neurotransmitter	P928	Item	neurotransmitter: which neurotransmitter activates the neuron	pyramidal cell <activating neurotransmitter> γ-aminobutyric acid	-
neurological function	P970	Item	the function of a neurological structure	retina bipolar cell <neurological function> phototransduction	-
innervates	P3190	Item	innervation: anatomical structures innervated by this nerve	musculocutaneous nerve <innervates> biceps brachii	innervated by
innervated by	P3189	Item	innervation: nerves which innervate this anatomical structure	biceps brachii <innervated by> musculocutaneous nerve	innervates

Pharmacology

Title	ID	Data type	Description	Examples	Inverse
CAS Registry Number	P231	External identifier	identifier for a chemical substance or compound per Chemical Abstract Service's Registry database	aspirin <CAS Registry Number> 50-78-2	-
canonical SMILES	P233	String	simplified molecular input line entry specification: Simplified Molecular Input Line Entry Specification (canonical format)	ethanol <canonical SMILES> CCO	-
InChI	P234	External identifier	International Chemical Identifier: International Chemical Identifier	ethanol <InChI> 1S/C2H6O/c1-2-3/h3H,2H2,1H3	-
InChIKey	P235	External identifier	InChIKey: A hashed version of the full standard InChI - designed to create an identifier that encodes structural information and can also be practically used in web searching.	ethanol <InChIKey> LFQSCWFLJHTTHZ-UHFFFAOYSA-N	-
ATC code	P267	External identifier	therapeutic chemical identification code per ATC	aspirin <ATC code> A01AD05	-
chemical formula	P274	String	chemical formula: description of chemical compound giving element symbols and counts	morphine <chemical formula> C17H19NO3	-
ChEMBL ID	P592	External identifier	identifier from a chemical database of bioactive molecules with drug-like properties	caffeine <ChEMBL ID> CHEMBL113	-
Guide to Pharmacology Ligand ID	P595	External identifier	ligand identifier of the Guide to Pharmacology database	morphine <Guide to Pharmacology Ligand ID> 1627	-
route of administration	P636	Item	route of administration: path by which a drug, fluid, poison, or other substance is taken into the body	aspirin <route of administration> oral administration	-
UNII	P652	External identifier	identifier issued by the FDA / Unique Ingredient Identifier	epinephrine <UNII> YKH834O4BH	-
ChemSpider ID	P661	External identifier	identifier in a free chemical database, owned by the Royal Society of Chemistry	(RS)-methadone <ChemSpider ID> 3953	-
PubChem CID	P662	External identifier	identifier from database of chemical molecules and their activities in biological assays (Compound ID number)	thalidomide <PubChem CID> 5426	-
ChEBI ID	P683	External identifier	identifier from database and ontology of molecular entities focused on 'small' chemical compounds	dimethyltryptamine <ChEBI ID> 28969	-
DrugBank ID	P715	External identifier	identifier in the bioinformatics and cheminformatics database from the University of Alberta	vitamin C <DrugBank ID> 00126	-
significant drug interaction	P769	Item	drug interaction: clinically significant interaction between two pharmacologically active substances (i.e., drugs and/or active metabolites) where concomitant intake can lead to altered effectiveness or adverse drug events.	(RS)-warfarin <significant drug interaction> lovastatin	-
side effect	P1909	Item	side effect and adverse drug reaction: effect of a medication or procedure, that occurs next to the desired effect	influenza vaccine <side effect> sore throat	-
vaccine for	P1924	Item	vaccine: disease that a vaccine is for	cholera vaccine <vaccine for> cholera	-
VIOLIN ID	P1925	External identifier	identifier in the VIOLIN database for vaccines and related subjects	Influvac <VIOLIN ID> 597	-
Vaccine Ontology ID	P1928	External identifier	identifier in the Vaccine Ontology database	Influvac <Vaccine Ontology ID> VO_0000867	-

Identifiers

Title	ID	Data type	Description	Examples	Inverse
PubMed ID	P698	External identifier	PubMed ID: identifier for journal articles/abstracts in PubMed	A Study of Variables Affecting the Quality of Platelets Stored at “Room Temperature” <PubMed ID> 823	-
PMCID	P932	External identifier	PMCID: identifier for a scientific work issued by PubMed Central (without "PMC" prefix)	EVOLUTION IN MENDELIAN POPULATIONS <PMCID> 1201091	-
internetmedicin.se ID	P2074	External identifier	ID in the Swedish database about medical topics	trichinosis <internetmedicin.se ID> 3911	-
MeSH term ID	P6680	External identifier	identifier of a "MeSH term" (Medical Subject Headings) of National Library of Medicine (National Institutes of Health - U.S. Department of Health)	amoxapine <MeSH term ID> T001967	-

Others

Title	ID	Data type	Description	Examples	Inverse
cost	P2130	Quantity	cost: amount of money spent on building or producing an object	Creasyville Covered Bridge <cost> 301.25 United States dollar	-
first aid measures	P2239	Item	first aid: actions to take to help a person in the case of exposure to this hazard or malady (accidents, injuries, harmful chemicals)	hafnium exposure <first aid measures> immediate eye irrigation, artificial respiration, immediate medical attention and prompt water flush with soap	-
price	P2284	Quantity	price: published price listed or paid for a product (use with unit of currency)	Warfarin sodium 1 mg tab-cap <price> 1.18 United States dollar	-

Property templates

• {{Medical properties}}

• {{NIH properties}}

Possible properties

List any ideas for new properties here. Check for overlap with:

• Wikidata:WikiProject Chemistry
• Wikidata:WikiProject Molecular biology

General

• Synonyms / Multilingual string
• Wikidata:Property proposal/OpenTrials ID. Suggestion.

Diseases

• Epidemiological parameters: age, sex, race predilection (mean/median, range, ratios, with qualifiers for studied region/population)
• Inheritance
• Human Metabolome Database (http://www.hmdb.ca/metabolites/HMDB00538)
• GARD urls

Pharmacology

• tradename / Multilingual string (?)
• Drugs.com / string
• images
  • structural formula / via Commons
  • 3D structural model / via Commons
  • tablet, vial, package... images/ ?
• DrugBank Q1122544
• licence_EU
• licence_US
• dailymed
• pregnancy_AU
• pregnancy_US
• pregnancy_category
• legal status in country (create property legal in and list all states? or create property illegal in and list all states?)
• dependency_liability ?
• bioavailability
• protein_bound (molecular biology task force?)
• metabolism
• elimination_half-life / Time datatype
• excretion / Time datatype
• solubility (chemistry task force?)
• specific_rotation
• sec_combustion
• drug combinations. e.g. sulfamethoxazole/trimethoprim (Q898623) ("combination of"?)

• How about sulfamethoxazole/trimethoprim (Q898623) has part(s) (P527) or made from material (P186) trimethoprim (Q422665) and sulfamethoxazole (Q415843) (Qualifiers could quantify the ratio)?

• PharmGKB Drug (https://www.pharmgkb.org/drug/PA164743471)
• RCSB PDB Ligand (http://www.rcsb.org/pdb/ligand/ligandsummary.do?hetId=ATP&sid=3HMN)
• BindingDB Ligand (http://www.bindingdb.org/bind/chemsearch/marvin/MolStructure.jsp?monomerid=2)

Anatomy

• Anatomy: Properties that would apply to most anatomical structures include supplying artery, draining vein, neural innervation and organ system. Other more specific properties:
  • bones: origins and insertions (muscles attaching to it), articulations
  • arteries: source, branches, area it supplies, corresponding vein
  • veins: source, drains into, corresponding artery
  • nerves: innervates, branches from/to
  • muscles: origin, insertion
• Anatomy classifications: snomed

Property proposal

Overview of a Wikidata statement

• Properties can link to:

• Another item
• String
• Number
• Image

• Properties can be proposed at:

• Wikidata:Property_proposal/Term#Medicine_.2F_Medizin_.2F_M.C3.A9decine

• Properties need to be reviewed (Ideally 3 supports):

•  Support
•  Comment
•  Oppose

• Look for properties that are still missing from various infoboxes

• Template:Infobox medical condition (old)

• Propose properties that connect medical items together with meaningful statements. Meaningful statements are more powerful than links, categories, lists, and other static representations of information on Wikipedia. Don't think of answers, but what kind of questions (queries) you would like to answer. E.g.:

• I want to know all the diseases that have the symptoms: running-nose and fever.
• That means that diseases have to be linked by a property "has symptoms" to certain systems. Qualifiers can be used to say things like: Frequency = 30 %, if a certain symptom only appears in 30 % of the cases.

• I want to know all the diseases that are caused by ingesting berries that are endemic to the Galapagos Islands.
• The biology task force are hopefully already adding plants to geographic places. We can query all the berry-forming plants on the Galapagos Islands that are known to be poisonous.

• Not only will this allow for extremely powerful queries in the future, but it will also allow us to generate lists, categories, infoboxes, stub-class articles, all automatically. The translation work will be kept to a minimum because the items and statements are already being translated.

• Another good thing is that most of the work is done by bots. After we agree on a property a request can be made at Wikidata:Bot requests for a bot to gather the information and add sources. Queries can be done by hand or by using certain visually appealing web interfaces (e.g. example)