The genome sequence of the colonial chordate, Botryllus schlosseri (Q21128793)

3

Debashis

Sahoo

1 reference

16 August 2022

Dmitry Pushkarev

5

Dmitry

Pushkarev

1 reference

16 August 2022

Benedetto Passarelli

7

Benedetto

Passarelli

1 reference

16 August 2022

H Christina Fan

8

H Christina

Fan

1 reference

16 August 2022

Gary L Mantalas

9

Gary L

Mantalas

1 reference

16 August 2022

Karla J Palmeri

10

Karla J

Palmeri

1 reference

16 August 2022

Katherine J Ishizuka

11

Katherine J

Ishizuka

1 reference

16 August 2022

Francesca Griggio

13

Francesca

Griggio

1 reference

16 August 2022

Rachel Ben-Shlomo

14

Rachel

Ben-Shlomo

1 reference

16 August 2022

Daniel M Corey

15

Daniel M

Corey

1 reference

16 August 2022

Lolita Penland

16

Lolita

Penland

1 reference

16 August 2022

Richard A White

17

Richard A 3rd

The enigmatic mitochondrial genome of Rhabdopleura compacta (Pterobranchia) reveals insights into selection of an efficient tRNA system and supports monophyly of Ambulacraria

White

1 reference

16 August 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

eLife

0 references

volume

2

0 references

page(s)

e00569

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

The Amphimedon queenslandica genome and the evolution of animal complexity

19 March 2017

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Origin and evolution of the adaptive immune system: genetic events and selective pressures

19 March 2017

1 reference

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Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny

19 March 2017

1 reference

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An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models

19 March 2017

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

19 March 2017

1 reference

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

19 March 2017

1 reference

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A novel nemaline myopathy in the Amish caused by a mutation in troponin T1

19 March 2017

1 reference

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Using the Acropora digitifera genome to understand coral responses to environmental change

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Tunicates and not cephalochordates are the closest living relatives of vertebrates

19 March 2017

1 reference

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The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

The Sequence Alignment/Map format and SAMtools

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Clustal W and Clustal X version 2.0

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

ProtTest: selection of best-fit models of protein evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Repetitive elements may comprise over two-thirds of the human genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Phylogenomics revives traditional views on deep animal relationships

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A novel myocyte-specific gene Midori promotes the differentiation of P19CL6 cells into cardiomyocytes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

RAG-1 and RAG-2, adjacent genes that synergistically activate V(D)J recombination

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Gene Expression Commons: an open platform for absolute gene expression profiling

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

BEDTools: a flexible suite of utilities for comparing genomic features

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

De novo identification of repeat families in large genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A whole-genome assembly of Drosophila

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Identification of a colonial chordate histocompatibility gene

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Repeated, long-term cycling of putative stem cells between niches in a basal chordate

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Identification of a rudimentary neural crest in a non-vertebrate chordate

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

GAGE: A critical evaluation of genome assemblies and assembly algorithms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Mechanisms of disease: hypertrophic cardiomyopathy

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Mutation analysis of 12 genes in Chinese families with congenital cataracts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Computational methods for Gene Orthology inference

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

The evolution of adaptive immunity in vertebrates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A thymus candidate in lampreys.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Whole-genome molecular haplotyping of single cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Using the Velvet de novo assembler for short-read sequencing technologies

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Gene enrichment profiles reveal T-cell development, differentiation, and lineage-specific transcription factors including ZBTB25 as a novel NF-AT repressor

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Dual nature of the adaptive immune system in lampreys

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Identification of the endostyle as a stem cell niche in a colonial chordate

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A conserved role of the VEGF pathway in angiogenesis of an ectodermally-derived vasculature

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Common and divergent pathways in alternative developmental processes of ascidians

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Ascidian molecular phylogeny inferred from mtDNA data with emphasis on the Aplousobranchiata

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Urochordates are monophyletic within the deuterostomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Mutations in the gene encoding tight junction claudin-14 cause autosomal recessive deafness DFNB29.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Molecular genetics of hearing impairment due to mutations in gap junction genes encoding beta connexins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

50 million years of chordate evolution: seeking the origins of adaptive immunity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Heritable germ and somatic cell lineage competitions in chimeric colonial protochordates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Somatic and germ cell parasitism in a colonial ascidian: possible role for a highly polymorphic allorecognition system

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Molecular evolution of the vertebrate immune system

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A Murine T Cell Receptor Gene Complex: Isolation, Structure and Rearrangement

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Evolutionary crossroads in developmental biology: the tunicates.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Expression and transcriptional regulation of individual pregnancy-specific glycoprotein genes in differentiating trophoblast cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Multiple origins of the ascidian-Prochloron symbiosis: molecular phylogeny of photosymbiotic and non-symbiotic colonial ascidians inferred from 18S rDNA sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Fluorescent in situ hybridization to ascidian chromosomes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

DNA extraction from Pleistocene bones by a silica-based purification method

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Invertebrate allorecognition: the origins of histocompatibility

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Mapping the genome of a model protochordate. I. A low resolution genetic map encompassing the fusion/histocompatibility (Fu/HC) locus of Botryllus schlosseri

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

A morphological and immunohistochemical study of programmed cell death in Botryllus schlosseri (Tunicata, Ascidiacea).

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3699833

Haemocytes and blastogenetic cycle in the colonial ascidian Botryllus schlosseri: a matter of life and death

30 May 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Linkage analysis of HSP70 genes and historecognition locus in botryllus schlosseri.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Vascular regeneration and angiogenic-like sprouting mechanism in a compound ascidian is similar to vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Migratory neural crest-like cells form body pigmentation in a urochordate embryo.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Stem cells are units of natural selection in a colonial ascidian.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Two genetically separable steps in the differentiation of thymic epithelium.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) inferred from mitochondrial and nuclear DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Genetic variability of Botryllus schlosseri invasions to the east and west coasts of the USA

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Striving for normality: whole body regeneration through a series of abnormal generations.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Variability in the Lambda Light Chain Sequences of Mouse Antibody

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Coloniality has evolved once in Stolidobranch Ascidians.

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Protochordate allorecognition is controlled by a MHC-like gene system

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.00569

Separation and labeling of specific subpopulations ofBotryllus blood cells

21 January 2018

1 reference

12 December 2020

CHROMOSOMES OF BOTRYLLUS SCHLOSSERI (ASCIDIACEA)

1 reference

12 December 2020

Determination of polarity and bilateral asymmetry in palleal and vascular buds of the ascidian Botryllus schlosseri

1 reference

12 December 2020

Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates

1 reference

12 December 2020

The circulatory system ofAmphioxus (Branchiostoma floridae) I. Morphology of the major vessels of the pharyngeal area

1 reference

12 December 2020

Hovering between death and life: Natural apoptosis and phagocytes in the blastogenetic cycle of the colonial ascidian Botryllus schlosseri

1 reference

12 December 2020

Identifiers

DOI

10.7554/ELIFE.00569

1 reference

1006050

1006050

1 reference

1 reference

1 reference