Direct detection of alternative open reading frames translation products in human significantly expands the proteome (Q21132658)

2

Jean-François

Lucier

1 reference

16 August 2022

Cyntia Bissonnette

3

Cyntia

Bissonnette

1 reference

16 August 2022

Julie Motard

4

Julie

Motard

1 reference

16 August 2022

Guillaume Tremblay

5

Guillaume

Tremblay

1 reference

16 August 2022

Solène Vanderperre

6

Solène

Vanderperre

1 reference

16 August 2022

François-Michel Boisvert

9

François-Michel

Boisvert

1 reference

16 August 2022

Xavier Roucou

10

Xavier

Creative Commons Attribution 4.0 International

Roucou

1 reference

16 August 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

PLOS One

0 references

volume

8

0 references

issue

8

0 references

page(s)

e70698

0 references

copyright license

start time

12 August 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Two overlapping reading frames in a single exon encode interacting proteins--a novel way of gene usage

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Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

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Peptidomic discovery of short open reading frame-encoded peptides in human cells.

12 September 2017

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

12 September 2017

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Observation of dually decoded regions of the human genome using ribosome profiling data

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12 September 2017

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Yeast two-hybrid junk sequences contain selected linear motifs

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Protein alpha-N-acetylation studied by N-terminomics

12 September 2017

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Multivariate analyses for biomarkers hunting and validation through on-tissue bottom-up or in-source decay in MALDI-MSI: application to prostate cancer

12 September 2017

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Emerging molecular biomarkers--blood-based strategies to detect and monitor cancer

12 September 2017

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Molecular diversity through RNA editing: a balancing act.

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Alternative translation start sites and hidden coding potential of eukaryotic mRNAs

12 September 2017

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12 September 2017

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Alternative translational products and cryptic T cell epitopes: expecting the unexpected

12 September 2017

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The potential role of ribosomal frameshifting in generating aberrant proteins implicated in neurodegenerative diseases

12 September 2017

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The abundance of short proteins in the mammalian proteome

12 September 2017

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Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs

12 September 2017

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The ABC's (and XYZ's) of peptide sequencing

12 September 2017

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Reprogrammed genetic decoding in cellular gene expression.

12 September 2017

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Identification of BING-4 cancer antigen translated from an alternative open reading frame of a gene in the extended MHC class II region using lymphocytes from a patient with a durable complete regression following immunotherapy

12 September 2017

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A non-AUG-defined alternative open reading frame of the intestinal carboxyl esterase mRNA generates an epitope recognized by renal cell carcinoma-reactive tumor-infiltrating lymphocytes in situ

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Utilization of an alternative open reading frame of a normal gene in generating a novel human cancer antigen

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

A large ribonucleoprotein particle induced by cytoplasmic PrP shares striking similarities with the chromatoid body, an RNA granule predicted to function in posttranscriptional gene regulation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Cellular prion protein inhibits proapoptotic Bax conformational change in human neurons and in breast carcinoma MCF-7 cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Yeast forward and reverse 'n'-hybrid systems

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

HAltORF: a database of predicted out-of-frame alternative open reading frames in human

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Regulation of endothelial argininosuccinate synthase expression and NO production by an upstream open reading frame

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

The peptide product of a 5' leader cistron in the beta 2 adrenergic receptor mRNA inhibits receptor synthesis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Hidden coding potential of eukaryotic genomes: nonAUG started ORFs

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Specific MALDI Imaging and Profiling for Biomarker Hunting and Validation: Fragment of the 11S Proteasome Activator Complex, Reg Alpha Fragment, Is a New Potential Ovary Cancer Biomarker

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

Human CTLs to wild-type and enhanced epitopes of a novel prostate and breast tumor-associated protein, TARP, lyse human breast cancer cells

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3741303

10.1371/JOURNAL.PONE.0070698

29 November 2018

Identifiers

DOI

1 reference

1240267

ADS bibcode

2013PLoSO...870698V

0 references

1240267

1 reference

1 reference

1 reference