Intricate knots in proteins: Function and evolution (Q21145675)

17 August 2022

1

Peter

Virnau

Peter Virnau

1 reference

17 August 2022

Leonid A Mirny

2

Leonid A

Mirny

1 reference

16978047

PLOS Computational Biology

17 August 2022

language of work or name

English

0 references

publication date

15 September 2006

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published in

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volume

2

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issue

9

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page(s)

e122

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copyright license

Creative Commons Attribution 4.0 International

start time

15 September 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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19 March 2017

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The crystal structure of tetrameric methionine adenosyltransferase from rat liver reveals the methionine-binding site

19 March 2017

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Crystal structure of human ornithine transcarbamylase complexed with carbamoyl phosphate and L-norvaline at 1.9 A resolution

19 March 2017

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Structural basis for the specificity of ubiquitin C-terminal hydrolases

19 March 2017

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The crystal structure of Pyrococcus furiosus ornithine carbamoyltransferase reveals a key role for oligomerization in enzyme stability at extremely high temperatures

19 March 2017

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Flexible loop in the structure of S-adenosylmethionine synthetase crystallized in the tetragonal modification

19 March 2017

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19 March 2017

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19 March 2017

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Mapping the protein universe

19 March 2017

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19 March 2017

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Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis

19 March 2017

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The neuron-specific protein PGP 9.5 is a ubiquitin carboxyl-terminal hydrolase

19 March 2017

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Database of homology-derived protein structures and the structural meaning of sequence alignment

19 March 2017

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Probing nature's knots: the folding pathway of a knotted homodimeric protein

7 April 2017

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Statistics of knots, geometry of conformations, and evolution of proteins

12 September 2017

1 reference

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Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1

12 September 2017

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The crystal structure of a bacterial class II ketol-acid reductoisomerase: domain conservation and evolution.

12 September 2017

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Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria.

12 September 2017

1 reference

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Partitioning between unfolding and release of native domains during ClpXP degradation determines substrate selectivity and partial processing

12 September 2017

1 reference

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Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate

12 September 2017

1 reference

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Protein knots: A tangled problem

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

A deeply knotted protein structure and how it might fold.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

The crystal structure of plant acetohydroxy acid isomeroreductase complexed with NADPH, two magnesium ions and a herbicidal transition state analog determined at 1.65Aresolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

Folding studies on a knotted protein

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

Proteins are unfolded on the surface of the ATPase ring before transport into the proteasome

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

Opening doors into the proteasome.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

Are there knots in proteins?

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570178

Exploring the folding funnel of a polypeptide chain by biophysical studies on protein fragments

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/16978047

12 December 2020

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/16978047

12 December 2020

inferred from PubMed ID database lookup

Knots in Globule and Coil Phases of a Model Polyethylene

1 reference

https://pubmed.ncbi.nlm.nih.gov/16978047

12 December 2020

inferred from PubMed ID database lookup

Linear Random Knots and Their Scaling Behavior

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.0020122

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.0020122

1 reference

journals/ploscb/VirnauMK06

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

16978047

1 reference