ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms (Q21263079)

6 July 2017

ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms (English)

1 reference

6 July 2017

0 references

Eduardo Pareja

1

1 reference

6 July 2017

Pablo Pareja-Tobes

2

Pablo

Pareja-Tobes

1 reference

6 July 2017

Marina Manrique

3

Marina

Manrique

1 reference

6 July 2017

Eduardo Pareja-Tobes

4

1 reference

6 July 2017

Javier Bonal

5

Javier

Bonal

1 reference

6 July 2017

Raquel Tobes

6

Raquel

Tobes

1 reference

6 July 2017

language of work or name

English

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publication date

15 March 2006

1 reference

6 July 2017

1 reference

6 July 2017

6

1 reference

6 July 2017

1

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page(s)

29

1 reference

Limitations and potentials of current motif discovery algorithms

6 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

P-Match: transcription factor binding site search by combining patterns and weight matrices

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

PromoterPlot: a graphical display of promoter similarities by pattern recognition

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

InterPro, progress and status in 2005

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

The Universal Protein Resource (UniProt)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

Assessing computational tools for the discovery of transcription factor binding sites

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

TRANSFAC: transcriptional regulation, from patterns to profiles

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

MatInspector and beyond: promoter analysis based on transcription factor binding sites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

BEARR: Batch Extraction and Analysis of cis-Regulatory Regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

AraC-XylS database: a family of positive transcriptional regulators in bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

Comparative approach to analysis of regulation in complete genomes: multidrug resistance systems in gamma-proteobacteria.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

BacTregulators: a database of transcriptional regulators in bacteria and archaea.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1453763

Repetitive extragenic palindromic sequences in the Pseudomonas syringae pv. tomato DC3000 genome: extragenic signals for genome reannotation

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16539733

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2180-6-29

1 reference

Dimensions Publication ID

6 July 2017

0 references

1 reference

6 July 2017

1 reference