Reconstruction of ancestral protein sequences and its applications (Q21283980)

Dimensions

18 August 2022

Wei Cai

1

Wei

Cai

1 reference

Dimensions

1046719265

18 August 2022

Jimin Pei

series ordinal

2

author given names

Jimin

author last names

Pei

1 reference

Dimensions

1046719265

describes a project that uses

18 August 2022

language of work or name

English

0 references

publication date

17 September 2004

0 references

published in

BMC Evolutionary Biology

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volume

4

0 references

issue

1

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page(s)

33

0 references

Bayes' theorem

1 reference

Europe PubMed Central

18 June 2022

https://europepmc.org/article/PMC/522809

inferred from PubMed Central ID database lookup

cites work

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19 March 2017

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Probabilistic reconstruction of ancestral protein sequences

19 March 2017

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A new method of inference of ancestral nucleotide and amino acid sequences

19 March 2017

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

19 March 2017

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7 April 2017

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12 September 2017

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12 September 2017

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Taking variation of evolutionary rates between sites into account in inferring phylogenies

12 September 2017

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12 September 2017

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Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

12 September 2017

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12 September 2017

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30 May 2018

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30 May 2018

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A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522809

Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors.

29 November 2018

1 reference

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Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522809

Analysis and prediction of functional sub-types from protein sequence alignments.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522809

Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522809

Statistical tests of models of DNA substitution.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522809

Modeling amino acid replacement

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15377393

12 December 2020

inferred from PubMed ID database lookup

A simple method for estimating the parameter of substitution rate variation among sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15377393

12 December 2020

inferred from PubMed ID database lookup

Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15377393

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2148-4-33

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-4-33

1 reference

9 September 2019

1 reference

1 reference

PubMed publication ID

15377393

1 reference