Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee (Q21284310)

Dimensions

19 August 2022

4

Cedric Notredame

Cedric

Notredame

1 reference

Dimensions

19 August 2022

Paolo Di Tommaso

2

Paolo

Di Tommaso

1 reference

Dimensions

https://scigraph.springernature.com/pub.10.1186/1471-2105-13-s4-s1

19 August 2022

Jean-François Taly

3

0 references

Jean-Francois Taly

series ordinal

3

0 references

language of work or name

English

0 references

publication date

2012

0 references

1 reference

13 Suppl 4

0 references

13

0 references

page(s)

S1

0 references

issue

Suppl 4

0 references

exact match

0 references

cites work

Upcoming challenges for multiple sequence alignment methods in the high-throughput era

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

Kalign--an accurate and fast multiple sequence alignment algorithm

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

ProbCons: Probabilistic consistency-based multiple sequence alignment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

T-Coffee: A novel method for fast and accurate multiple sequence alignment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

The HMMTOP transmembrane topology prediction server

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

Recent developments in the MAFFT multiple sequence alignment program

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

NCBI Reference Sequences: current status, policy and new initiatives

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

UniRef: comprehensive and non-redundant UniProt reference clusters

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

PROMALS: towards accurate multiple sequence alignments of distantly related proteins.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

Defining the fold space of membrane proteins: the CAMPS database

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

HHsenser: exhaustive transitive profile search using HMM-HMM comparison

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303701

New alignment strategy for transmembrane proteins.

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-S4-S1

STAM: simple transmembrane alignment method.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-S4-S1

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-13-S4-S1

PRALINETM: a strategy for improved multiple alignment of transmembrane proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22536955

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-13-S4-S1

1 reference

journals/bmcbi/ChangTTN12

1556256

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1000165393

0 references

1556256

1 reference

1 reference

1 reference