Vaxign: the first web-based vaccine design program for reverse vaccinology and applications for vaccine development (Q21328677)

19 August 2022

3

Harry L T Mobley

Harry L T

Mobley

1 reference

19 August 2022

Zuoshuang Xiang

2

Zuoshuang

Xiang

1 reference

20671958

Journal of Biomedicine and Biotechnology

19 August 2022

language of work or name

English

0 references

publication date

2010

0 references

published in

0 references

volume

2010

0 references

page(s)

297505

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copyright license

Creative Commons Attribution 3.0 Unported

start time

1 January 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

SQL

1 reference

Europe PubMed Central

26 June 2022

https://europepmc.org/article/PMC/PMC2910479

inferred from PubMed Central ID database lookup

cites work

VIOLIN: vaccine investigation and online information network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

The immune epitope database and analysis resource: from vision to blueprint

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Type 1 fimbrial expression enhances Escherichia coli virulence for the urinary tract

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

X-ray structure of the FimC-FimH chaperone-adhesin complex from uropathogenic Escherichia coli

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

The complete genome sequence of Escherichia coli K-12

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

HIV vaccine development by computer assisted design: the GAIA vaccine

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Vaccination with FimH adhesin protects cynomolgus monkeys from colonization and infection by uropathogenic Escherichia coli

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Combining evidence using p-values: application to sequence homology searches

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Prevention of mucosal Escherichia coli infection by FimH-adhesin-based systemic vaccination

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

SYFPEITHI: database for MHC ligands and peptide motifs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Measuring the accuracy of diagnostic systems

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Mucosal immunization with iron receptor antigens protects against urinary tract infection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

T cell epitope: friend or foe? Immunogenicity of biologics in context

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Identification of uropathogenic Escherichia coli surface proteins by shotgun proteomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Correlation between virulence factors and in vitro biofilm formation by Escherichia coli strains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Uropathogenic Escherichia coli outer membrane antigens expressed during urinary tract infection

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Quantitative profile of the uropathogenic Escherichia coli outer membrane proteome during growth in human urine

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Identification of candidates for a subunit vaccine against extraintestinal pathogenic Escherichia coli

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

NERVE: new enhanced reverse vaccinology environment

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

A community resource benchmarking predictions of peptide binding to MHC-I molecules

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Immunomics: discovering new targets for vaccines and therapeutics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Transcriptome of uropathogenic Escherichia coli during urinary tract infection

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Predicting transmembrane beta-barrels in proteomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

The Siderophore receptor IroN of extraintestinal pathogenic Escherichia coli is a potential vaccine candidate

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Search for potential vaccine candidate open reading frames in the Bacillus anthracis virulence plasmid pXO1: in silico and in vitro screening

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Transcriptomics and proteomics: tools for the identification of novel drug targets and vaccine candidates for tuberculosis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Immuno-informatics: Mining genomes for vaccine components

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Genomic approach for analysis of surface proteins in Chlamydia pneumoniae

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

TonB-dependent systems of uropathogenic Escherichia coli: aerobactin and heme transport and TonB are required for virulence in the mouse

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Use of a whole genome approach to identify vaccine molecules affording protection against Streptococcus pneumoniae infection

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Molecular mimicry between HLA-DR alleles associated with rheumatoid arthritis and Proteus mirabilis as the Aetiological basis for autoimmunity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Campylobacter species and Guillain-Barré syndrome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

MHCPEP: a database of MHC-binding peptides

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

T-cell antigenic sites tend to be amphipathic structures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

An epitope in human immunodeficiency virus 1 reverse transcriptase recognized by both mouse and human cytotoxic T lymphocytes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

An interactive Web site providing major histocompatibility ligand predictions: application to HIV research

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

An empirical method for the prediction of T-cell epitopes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2910479

Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis

30 May 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Application of genomics and proteomics for identification of bacterial gene products as potential vaccine candidates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Urologic diseases in America Project: analytical methods and principal findings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Protective efficacy and immunogenicity of Escherichia coli K13 diphtheria toxoid conjugate against experimental ascending pyelonephritis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2010%2F297505

Phase 2 clinical trial of a vaginal mucosal vaccine for urinary tract infections

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20671958

12 December 2020

inferred from PubMed ID database lookup

Exact prediction of a natural T cell epitope

1 reference

https://pubmed.ncbi.nlm.nih.gov/20671958

12 December 2020

inferred from PubMed ID database lookup

HLA DR4w4-binding motifs illustrate the biochemical basis of degeneracy and specificity in peptide-DR interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/20671958

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1155/2010/297505

1 reference

release_57qnjwgkszg5bd7s22s7fzquwy

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/57qnjwgkszg5bd7s22s7fzquwy

24 November 2022

mapped directly with Wikidata item

1 reference

1 reference

20671958

1 reference