Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA (Q22065691)

30 July 2017

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title

Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA (English)

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Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA. (English)

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30 July 2017

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2

J D Helmann

J D

Helmann

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30 July 2017

Pieter L. deHaseth

1

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deHaseth PL

series ordinal

1

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PubMed ID

7476180

30 July 2017

language of work or name

English

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publication date

June 1995

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1 June 1995

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30 July 2017

Molecular Microbiology

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30 July 2017

16

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30 July 2017

5

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30 July 2017

817-824

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HhaI methyltransferase flips its target base out of the DNA helix

30 July 2017

2 references

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20 April 2017

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Mutations in sigma factor that affect the temperature dependence of transcription from a promoter, but not from a mismatch bubble in double-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

Topological unwinding of strong and weak promoters by RNA polymerase. A comparison between the lac wild-type and the UV5 sites of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

Allosteric underwinding of DNA is a critical step in positive control of transcription by Hg-MerR

21 January 2018

1 reference

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Promoter recognition by Escherichia coli RNA polymerase. Influence of DNA structure in the spacer separating the -10 and -35 regions.

21 January 2018

1 reference

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Promoter recognition by Escherichia coli RNA polymerase. Role of the spacer DNA in functional complex formation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

Supercoiling response of the lac ps promoter in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

High-resolution analysis of lac transcription complexes inside cells.

21 January 2018

1 reference

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All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling

21 January 2018

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A model for initiation at origins of DNA replication

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Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

Fine mapping of DNA single-stranded regions using base-specific chemical probes: study of an open complex formed between RNA polymerase and the lac UV5 promoter.

21 January 2018

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The Selectivity of Transcription

21 January 2018

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Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography

21 January 2018

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Studies on transcription of 3'-extended templates by mammalian RNA polymerase II. Parameters that affect the initiation and elongation reactions.

21 January 2018

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Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

21 January 2018

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DNA distortion accompanies transcriptional activation by the metal-responsive gene-regulatory protein MerR.

21 January 2018

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Photochemical cross-linking studies on the interaction of Escherichia coli RNA polymerase with T7 DNA

21 January 2018

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A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids

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Formation of open and elongating transcription complexes by RNA polymerase III.

21 January 2018

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The structure and mechanism of action of bacterial DNA-dependent RNA polymerase

21 January 2018

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Mechanism and control of transcription initiation in prokaryotes

21 January 2018

1 reference

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The structure of the RNA polymerase-promoter complex. DNA-bending-angle by quantitative electrooptics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

Location of close contacts between Escherichia coli RNA polymerase and guanine residues at promoters either with or without consensus -35 region sequences

21 January 2018

1 reference

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Factor-independent activation of Escherichia coli rRNA transcription. II. characterization of complexes of rrnB P1 promoters containing or lacking the upstream activator region with Escherichia coli RNA polymerase

21 January 2018

1 reference

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Origin of DNA helical structure and its sequence dependence.

21 January 2018

1 reference

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Spectroscopic analysis of DNA base-pair opening by Escherichia coli RNA polymerase. Temperature and ionic strength effects

21 January 2018

1 reference

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E. coli RNA polymerase interacts homologously with two different promoters

21 January 2018

1 reference

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The molecular topography of rna polymerase-promoter interaction

21 January 2018

1 reference

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Kinetics of the stages of transcription initiation at the Escherichia coli lac UV5 promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

A new start site for Escherichia coli RNA polymerase at an engineered short region of non-complementarity in double-stranded DNA.

21 January 2018

1 reference

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Probing the informational content of Escherichia coli sigma 70 region 2.3 by combinatorial cassette mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence.

21 January 2018

1 reference

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How the double helix breathes

21 January 2018

1 reference

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Construction and characterization of a mercury-independent MerR activator (MerRAC): transcriptional activation in the absence of Hg(II) is accompanied by DNA distortion.

21 January 2018

1 reference

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7 January 2021

The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter

1 reference

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RNA chain elongation by Escherichia coli RNA polymerase. Factors affecting the stability of elongating ternary complexes

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7 January 2021

Spacer mutations in the lac ps promoter

1 reference

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7 January 2021

Energetic coupling between DNA bending and base pair opening

1 reference

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Two amino acids in an RNA polymerase sigma factor involved in the recognition of adjacent base pairs in the -10 region of a cognate promoter

1 reference

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7 January 2021

Mutant sigma factor blocks transition between promoter binding and initiation of transcription

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7 January 2021

Laser crosslinking of E. coli RNA polymerase and T7 DNA

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7 January 2021

Uranyl mediated photofootprinting reveals strong E. coli RNA polymerase--DNA backbone contacts in the +10 region of the DeoP1 promoter open complex.

1 reference

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7 January 2021

Protein-DNA cross-linking at the lac promoter

1 reference

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Conformational changes in E. coli RNA polymerase during promoter recognition

1 reference

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DNA twist as a transcriptional sensor for environmental changes

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The phage RNA polymerases are related to DNA polymerases and reverse transcriptases

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Torsional rigidity of positively and negatively supercoiled DNA

1 reference

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The anatomy of A-, B-, and Z-DNA.

1 reference

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Two open complexes and a requirement for Mg2+ to open the lambda PR transcription start site

1 reference

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Structure of DNA polymerase I Klenow fragment bound to duplex DNA

1 reference

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7 January 2021

Evidence of DNA bending in transcription complexes imaged by scanning force microscopy

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

7 January 2021

Untwist and shout: a heavy metal-responsive transcriptional regulator

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

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Effects of amino acid substitutions in the -10 binding region of sigma E from Bacillus subtilis

1 reference

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Genetic and physiological studies of Bacillus subtilis sigma A mutants defective in promoter melting

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

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Structure and function of E. coli promoter DNA.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.1995.TB02309.X

7 January 2021

10.1111/J.1365-2958.1995.TB02309.X

Identifiers

DOI

1 reference

30 July 2017

1 reference

PubMed ID

7476180