The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences (Q24548098)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9671809%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

title

The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences (English)

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13 November 2019

2

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13 November 2019

K Lowenhaupt

3

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13 November 2019

Thomas Uwe Schwartz

5

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13 November 2019

author name string

A Herbert

1

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13 November 2019

J Alfken

4

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13 November 2019

L S Shlyakhtenko

6

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13 November 2019

Y L Lyubchenko

7

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13 November 2019

A Rich

8

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13 November 2019

language of work or name

English

0 references

publication date

1 August 1998

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13 November 2019

published in

Nucleic Acids Research

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13 November 2019

volume

26

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13 November 2019

issue

15

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13 November 2019

page(s)

3486-3493

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A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase

13 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

A method to identify and characterize Z-DNA binding proteins using a linear oligodeoxynucleotide

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Intron sequence directs RNA editing of the glutamate receptor subunit GluR2 coding sequence

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

24 March 2017

Atomic force microscope

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG)

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Regulation of serotonin-2C receptor G-protein coupling by RNA editing

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Control of kinetic properties of AMPA receptor channels by nuclear RNA editing

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Determinants of Ca2+ permeability in both TM1 and TM2 of high affinity kainate receptor channels: diversity by RNA editing

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

RNA editing in brain controls a determinant of ion flow in glutamate-gated channels

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Supercoiling of the DNA template during transcription

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Visualization of supercoiled DNA with atomic force microscopy in situ

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Two naturally occurring alpha2,6-sialyltransferase forms with a single amino acid change in the catalytic domain differ in their catalytic activity and proteolytic processing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

The biology of left-handed Z-DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Transcription of the human corticotropin-releasing hormone gene in NPLC cells is correlated with Z-DNA formation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Z-DNA binding protein from chicken blood nuclei.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Atomic force microscopy of long DNA: imaging in air and under water

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

The winged-helix DNA-binding motif: another helix-turn-helix takeoff

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Biomolecular imaging with the atomic force microscope

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Chicken double-stranded RNA adenosine deaminase has apparent specificity for Z-DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Atomic force microscopy of nucleoprotein complexes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Sequence-dependent energetics of the B-Z transition in supercoiled DNA containing nonalternating purine-pyrimidine sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Sequence-specific recognition of double helical nucleic acids by proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

RNA editing and hypermutation by adenosine deamination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

27 September 2017

A guide to RNA editing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Stabilization of Z DNA in vivo by localized supercoiling.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Base Sequence Criteria and Cartesian Coordinates For Stable B/Z and B/Z/B Junctions in Relaxed DNA

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Structure and dynamics of supercoil-stabilized DNA cruciforms.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

A standardized nomenclature for adenosine deaminases that act on RNA.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147729

Atomic force microscopy imaging of double stranded DNA and RNA

28 November 2018

1 reference

12 December 2020

Left-handed DNA in restriction fragments and a recombinant plasmid

1 reference

12 December 2020

Conformational properties of B-Z junctions in DNA

1 reference

12 December 2020

Raman spectroscopy of Z-form poly[d(A-T)].cntdot.poly[d(A-T)]

1 reference

12 December 2020

The in-vivo occurrence of Z DNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/26.15.3486

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9671809%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9671809%20AND%20SRC:MED&resulttype=core&format=json

13 November 2019

2 references