SHIFTX2: significantly improved protein chemical shift prediction (Q24604571)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Quantum-mechanics-derived 13Calpha chemical shift server (CheShift) for protein structure validation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

GeNMR: a web server for rapid NMR-based protein structure determination

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Consistent blind protein structure generation from NMR chemical shift data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

VADAR: a web server for quantitative evaluation of protein structure quality

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Basic local alignment search tool

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Errors in protein structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

1H, 13C and 15N chemical shift referencing in biomolecular NMR

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Relationship between nuclear magnetic resonance chemical shift and protein secondary structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

PROSESS: a protein structure evaluation suite and server

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

A probabilistic approach for validating protein NMR chemical shift assignments

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Detection of unrealistic molecular environments in protein structures based on expected electron densities

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Fast and accurate predictions of protein NMR chemical shifts from interatomic distances.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

CheckShift improved: fast chemical shift reference correction with high accuracy

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Relationship between chemical shift value and accessible surface area for all amino acid atoms.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

A new model for chemical shifts of amide hydrogens in proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

A simple method to predict protein flexibility using secondary chemical shifts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Data mining in bioinformatics using Weka

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

PROSHIFT: Protein chemical shift prediction using artificial neural networks

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

RefDB: a database of uniformly referenced protein chemical shifts

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Automated prediction of 15N, 13Calpha, 13Cbeta and 13C' chemical shifts in proteins using a density functional database

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

C alpha and C beta carbon-13 chemical shifts in proteins from an empirical database

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Automated 1H and 13C chemical shift prediction using the BioMagResBank

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

Comparisons of ring-current shifts calculated from the crystal structure of egg white lysozyme of hen with the proton nuclear magnetic resonance spectrum of lysozyme in solution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

A relational database for sequence-specific protein NMR data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3085061

A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting

27 September 2017

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

Enhanced conformational space sampling improves the prediction of chemical shifts in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

Secondary-structure dependent chemical shifts in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

CAMRA: chemical shift based computer aided protein NMR assignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

Magnetic resonance studies of macromolecules. I. Aromatic-methyl interactions and helical structure effects in lysozyme

21 January 2018

1 reference

12 December 2020

4D prediction of protein (1)H chemical shifts

1 reference

12 December 2020

13C NMR chemical shifts can predict disulfide bond formation

1 reference

12 December 2020

Chemical shift homology in proteins

1 reference

12 December 2020

Protein chemical shift analysis: a practical guide

1 reference

12 December 2020

Empirical correlation between protein backbone conformation and C.alpha. and C.beta. 13C nuclear magnetic resonance chemical shifts

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

7 January 2021

inferred from DOI database lookup

The WEKA data mining software: an update

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

7 January 2021

inferred from DOI database lookup

1 reference

https://api.crossref.org/works/10.1007%2FS10858-011-9478-4

7 January 2021

inferred from DOI database lookup

Circuit Depth Reduction for Gate-Model Quantum Computers

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/S10858-011-9478-4

Local knowledge helps determine protein structures

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1007/S10858-011-9478-4

Identifiers

DOI

10.1007/S10858-011-9478-4

1 reference

Dimensions Publication ID

1001623557

0 references

1 reference

1 reference

PubMed publication ID

21448735

1 reference