Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes (Q24611196)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21097885%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes (English)

1 reference

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16 January 2020

0 references

4

1 reference

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16 January 2020

Albino Bacolla

7

1 reference

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16 January 2020

1

Regina Z Cer

1 reference

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16 January 2020

3

Uma S Mudunuri

1 reference

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16 January 2020

5

Natalia Volfovsky

1 reference

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16 January 2020

author name string

Kevin H Bruce

2

1 reference

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16 January 2020

Brian T Luke

6

1 reference

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16 January 2020

Jack R Collins

8

1 reference

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16 January 2020

Robert M Stephens

9

1 reference

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16 January 2020

language of work or name

English

0 references

publication date

21 November 2010

1 reference

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16 January 2020

published in

Nucleic Acids Research

1 reference

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16 January 2020

volume

39

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16 January 2020

issue

Database issue

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16 January 2020

page(s)

D383-91

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Creative Commons Attribution-NonCommercial 2.5 Generic

16 January 2020

copyright license

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The role of DNA shape in protein-DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The generic genome browser: a building block for a model organism system database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The non-B-DNA structure of d(CA/TG)n does not differ from that of Z-DNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

7 April 2017

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

7 January 2021

inferred from DOI database lookup

The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Structural origins of adenine-tract bending

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Tandem repeats finder: a program to analyze DNA sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

A palindrome-mediated recurrent translocation with 3:1 meiotic nondisjunction: the t(8;22)(q24.13;q11.21).

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The constitutional t(11;22): implications for a novel mechanism responsible for gross chromosomal rearrangements.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

A measure of bending in nucleic acids structures applied to A-tract DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The DNA unwinding element binding protein DUE-B interacts with Cdc45 in preinitiation complex formation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Triplet repeat length bias and variation in the human transcriptome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Isodicentric Y chromosomes and sex disorders as byproducts of homologous recombination that maintains palindromes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Non-B DNA structure-induced genetic instability and evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Pilin gene variation in Neisseria gonorrhoeae: reassessing the old paradigms

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Human genomic Z-DNA segments probed by the Z alpha domain of ADAR1.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Further delineation of nonhomologous-based recombination and evidence for subtelomeric segmental duplications in 1p36 rearrangements.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Circular dichroism and conformational polymorphism of DNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

bioDBnet: the biological database network

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Thermogenomics: thermodynamic-based approaches to genomic analyses of DNA structure

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Abundance and length of simple repeats in vertebrate genomes are determined by their structural properties

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Quadruplex DNA crystal structures and drug design

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

An Introduction to BioPerl

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Discovery of alternative DNA structures: a heroic decade (1979-1989).

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Non-B DNA conformations, genomic rearrangements, and human disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Timeline: Z-DNA: the long road to biological function

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Palindrome resolution and recombination in the mammalian germ line

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Measurement of unrestrained negative supercoiling and topological domain size in living human cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Inverted DNA repeats: a source of eukaryotic genomic instability

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

27 September 2017

Triplex DNA structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

In vivo binding of trimethylpsoralen detects DNA structural alterations associated with transcribing regions in the human beta-globin cluster

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Structural intermediates of deletion mutagenesis: a role for palindromic DNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The chemistry and biology of unusual DNA structures adopted by oligopurine.oligopyrimidine sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

The level of Z-DNA in metabolically active, permeabilized mammalian cell nuclei is regulated by torsional strain

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Evidence for torsional stress in transcriptionally activated chromatin

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Transcriptionally driven cruciform formation in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013731

Crystal structure of an intermolecular 2:1 complex between adenine and thymine. Evidence for both Hoogsteen and 'quasi-Watson-Crick' interactions.

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

The functional response of upstream DNA to dynamic supercoiling in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

Pkd1 unusual DNA conformations are recognized by nucleotide excision repair

21 January 2018

1 reference

12 December 2020

Left-handed double helical DNA: variations in the backbone conformation

1 reference

12 December 2020

The physical chemistry of cruciform structures in supercoiled DNA molecules.

1 reference

12 December 2020

Non-B right-handed DNA conformations of homopurine.homopyrimidine sequences in the murine immunoglobulin C alpha switch region

1 reference

12 December 2020

Influence of DNA sequence and supercoiling on the process of cruciform formation

1 reference

12 December 2020

Large-scale effects of transcriptional DNA supercoiling in vivo

1 reference

12 December 2020

Probing DNA structure with osmium tetroxide complexes in vitro

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1170

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1093/NAR/GKQ1170

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21097885%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/CerBMYVLBCS11

16 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21097885%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

2 references