The functional response of upstream DNA to dynamic supercoiling in vivo (Q46809726)

25 December 2017

title

The functional response of upstream DNA to dynamic supercoiling in vivo (English)

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25 December 2017

4

David Levens

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25 December 2017

author name string

Fedor Kouzine

series ordinal

1

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25 December 2017

Suzanne Sanford

series ordinal

2

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Zichrini Elisha-Feil

series ordinal

3

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25 December 2017

publication date

13 January 2008

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25 December 2017

Nature Structural & Molecular Biology

number of pages

9

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based on heuristic

inferred from page(s)

published in

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25 December 2017

volume

15

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25 December 2017

issue

2

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25 December 2017

page(s)

146-154

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25 December 2017

Effects of histone acetylation on chromatin topology in vivo

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Template topology and transcription: chromatin templates relaxed by localized linearization are transcriptionally active in yeast

21 January 2018

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Supercoil-driven DNA structures regulate genetic transactions

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Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

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Effect of varying the supercoiling of DNA on transcription and its regulation.

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DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

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DNA topoisomerases: structure, function, and mechanism

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Protein tracking-induced supercoiling of DNA: a tool to regulate DNA transactions in vivo?

31 March 2020

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Force and velocity measured for single molecules of RNA polymerase.

31 March 2020

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Transcription-driven DNA supercoiling and gene expression control

31 March 2020

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The dynamic response of upstream DNA to transcription-generated torsional stress

31 March 2020

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Differential control of transcription-induced and overall DNA supercoiling by eukaryotic topoisomerases in vitro.

31 March 2020

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Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.

31 March 2020

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In vivo dynamics of RNA polymerase II transcription.

31 March 2020

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Rapid spontaneous accessibility of nucleosomal DNA.

31 March 2020

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Structural plasticity of single chromatin fibers revealed by torsional manipulation

31 March 2020

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Unusual DNA structures, chromatin and transcription

31 March 2020

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The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c-myc expression

31 March 2020

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Unrestraining genetic processes with a protein-DNA hinge

31 March 2020

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Cooperative activity of BRG1 and Z-DNA formation in chromatin remodeling

31 March 2020

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Nucleosomes unfold completely at a transcriptionally active promoter.

31 March 2020

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Novel mechanism of cellular DNA topoisomerase II inhibition by the pyranonaphthoquinone derivatives alpha-lapachone and beta-lapachone

31 March 2020

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Inhibition of Flp recombinase by the topoisomerase I-targeting drugs, camptothecin and NSC-314622.

31 March 2020

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New peptide inhibitors of type IB topoisomerases: similarities and differences vis-a-vis inhibitors of tyrosine recombinases

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Topoisomerase I inhibitors: camptothecins and beyond

31 March 2020

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Site-specific in vivo cleavages by DNA topoisomerase I in the regulatory regions of the 35 S rRNA in Saccharomyces cerevisiae are transcription independent

31 March 2020

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Specialized chromatin structure domain boundary elements flanking a Drosophila heat shock gene locus are under torsional strain in vivo.

31 March 2020

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Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

31 March 2020

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Loss of FBP function arrests cellular proliferation and extinguishes c-myc expression

31 March 2020

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The FBP interacting repressor targets TFIIH to inhibit activated transcription

31 March 2020

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Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation

31 March 2020

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Tissue-specific nuclear architecture and gene expression regulated by SATB1

31 March 2020

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A novel calcium signaling pathway targets the c-fos intragenic transcriptional pausing site

31 March 2020

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An abundance of bidirectional promoters in the human genome

31 March 2020

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WebSIDD: server for predicting stress-induced duplex destabilized (SIDD) sites in superhelical DNA.

31 March 2020

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Measurement of unrestrained negative supercoiling and topological domain size in living human cells

31 March 2020

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Marking of active genes on mitotic chromosomes

31 March 2020

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DNA methylation and Z-DNA formation as mediators of quantitative differences in the expression of alleles

31 March 2020

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Cellular nucleic acid binding protein regulates the CT element of the human c-myc protooncogene

31 March 2020

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Formation of triple-stranded DNA at d(GA.TC)n sequences prevents nucleosome assembly and is hindered by nucleosomes.

31 March 2020

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Characterization of Z-DNA as a nucleosome-boundary element in yeast Saccharomyces cerevisiae

31 March 2020

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The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing.

31 March 2020

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Histone release during transcription: displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress.

31 March 2020

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Chromatin remodeling: nucleosomes bulging at the seams

31 March 2020

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Histone release during transcription: NAP1 forms a complex with H2A and H2B and facilitates a topologically dependent release of H3 and H4 from the nucleosome

31 March 2020

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Histone release during transcription: acetylation stabilizes the interaction of the H2A-H2B dimer with the H3-H4 tetramer in nucleosomes that are on highly positively coiled DNA

31 March 2020

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Transcriptional coupling between the divergent promoters of a prototypic LysR-type regulatory system, the ilvYC operon of Escherichia coli

31 March 2020

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Analysis of topoisomerase I and II cleavage sites on the Drosophila actin and Hsp70 heat shock genes

31 March 2020

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Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking

31 March 2020

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BCL-6 represses genes that function in lymphocyte differentiation, inflammation, and cell cycle control.

31 March 2020

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Regulation of Cre recombinase activity by mutated estrogen receptor ligand-binding domains

31 March 2020

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Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila

31 March 2020

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A sequence-specific, single-strand binding protein activates the far upstream element of c-myc and defines a new DNA-binding motif

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NSMB.1372

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25 December 2017

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25 December 2017