Small RNA and transcriptional upregulation (Q24619858)

Europe PubMed Central

title

Small RNA and transcriptional upregulation (English)

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3

Robert F Place

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author name string

Victoria Portnoy

series ordinal

1

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Vera Huang

series ordinal

2

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Long-Cheng Li

series ordinal

4

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language of work or name

English

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publication date

2011

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Wiley interdisciplinary reviews. RNA

published in

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Activation of LDL receptor expression by small RNAs complementary to a noncoding transcript that overlaps the LDLR promoter

volume

2

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issue

5

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page(s)

748-60

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cites work

1 reference

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Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter

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Long noncoding RNA as modular scaffold of histone modification complexes

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RNAa is conserved in mammalian cells

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MicroRNA-373 induces expression of genes with complementary promoter sequences

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Small dsRNAs induce transcriptional activation in human cells

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In situ fluorescence analysis demonstrates active siRNA exclusion from the nucleus by Exportin 5.

7 April 2017

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DNA looping induced by a transcriptional enhancer in vivo

7 April 2017

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MicroRNA targets in Drosophila

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Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA

7 April 2017

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7 April 2017

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Argonaute2 is the catalytic engine of mammalian RNAi

7 April 2017

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Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells

7 April 2017

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

7 April 2017

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Passenger-strand cleavage facilitates assembly of siRNA into Ago2-containing RNAi enzyme complexes

7 April 2017

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Switching from repression to activation: microRNAs can up-regulate translation

7 April 2017

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Mechanistic principles of chromatin remodeling guided by siRNAs and miRNAs

7 April 2017

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MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation

7 April 2017

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Involvement of AGO1 and AGO2 in mammalian transcriptional silencing

7 April 2017

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Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells

7 April 2017

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A novel class of small RNAs bind to MILI protein in mouse testes

7 April 2017

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Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation

7 April 2017

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Killing the messenger: short RNAs that silence gene expression

7 April 2017

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Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

A novel class of small RNAs in mouse spermatogenic cells

7 April 2017

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Characterization of the piRNA Complex from Rat Testes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Antisense transcription in the mammalian transcriptome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

A distinct small RNA pathway silences selfish genetic elements in the germline

7 April 2017

1 reference

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Rational siRNA design for RNA interference

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

p21WAF1/CIP1 gene transcriptional activation exerts cell growth inhibition and enhances chemosensitivity to cisplatin in lung carcinoma cell

7 April 2017

1 reference

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Suppression of Migration and Invasion of PC3 Prostate Cancer Cell Line via Activating E-Cadherin Expression by Small Activating RNA

27 September 2017

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Defining features and exploring chemical modifications to manipulate RNAa activity

27 September 2017

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Transcriptional regulation by small RNAs at sequences downstream from 3' gene termini

27 September 2017

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Double strand RNA-guided endogeneous E-cadherin up-regulation induces the apoptosis and inhibits proliferation of breast carcinoma cells in vitro and in vivo

27 September 2017

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Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers

27 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Effect of chemical modifications on modulation of gene expression by duplex antigene RNAs that are complementary to non-coding transcripts at gene promoters

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

MicroRNAs--targeting and target prediction

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Expanded RNA-binding activities of mammalian Argonaute 2.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Efficient regulation of VEGF expression by promoter-targeted lentiviral shRNAs based on epigenetic mechanism: a novel example of epigenetherapy

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Predicting potential miRNA target sites within gene promoters

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

MicroRNA-directed transcriptional gene silencing in mammalian cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Up-regulation of E-cadherin by small activating RNA inhibits cell invasion and migration in 5637 human bladder cancer cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Antisense transcripts are targets for activating small RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

A multifunctional human Argonaute2-specific monoclonal antibody

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Up-regulation of p21WAF1/Cip1 by saRNA induces G1-phase arrest and apoptosis in T24 human bladder cancer cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Antitumor effect of dsRNA-induced p21(WAF1/CIP1) gene activation in human bladder cancer cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Activating gene expression in mammalian cells with promoter-targeted duplex RNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Gene silencing through RNA interference (RNAi) in vivo: strategies based on the direct application of siRNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Small interfering RNA-induced transcriptional gene silencing in human cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Genetic analysis of RNA-mediated transcriptional gene silencing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Structure, function and evolution of CpG island promoters

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Heavy de novo methylation at symmetrical and non-symmetrical sites is a hallmark of RNA-directed DNA methylation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

RNA-directed de novo methylation of genomic sequences in plants.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Enhancing the efficiency of transgene expression

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Hybridization of chromosomal RNA to native DNA

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Introns increase transcriptional efficiency in transgenic mice

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Complex transcriptional units: diversity in gene expression by alternative RNA processing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

A hexanucleotide element directs microRNA nuclear import.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Double stranded-RNA-mediated activation of P21 gene induced apoptosis and cell cycle arrest in renal cell carcinoma

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Intricate combinatorial patterns of exon splicing generate multiple regulated troponin T isoforms from a single gene

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

E-cadherin-mediated cell-cell adhesion prevents invasiveness of human carcinoma cells

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster.

30 May 2018

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21 January 2018

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Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage.

21 January 2018

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Tiny RNAs associated with transcription start sites in animals.

21 January 2018

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E-cadherin intron 2 contains cis-regulatory elements essential for gene expression.

21 January 2018

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Germline E-cadherin Gene (CDH1) Mutations Predispose to Familial Gastric Cancer and Colorectal Cancer

21 January 2018

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Comparison and integration of target prediction algorithms for microRNA studies

21 January 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

Methylation of the E-cadherin gene promoter correlates with progression of prostate cancer

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3154074

p21Waf1/Cip1/Sdi1 induces permanent growth arrest with markers of replicative senescence in human tumor cells lacking functional p53

28 November 2018

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12 December 2020

Selective control of DNA helix openings during gene regulation

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12 December 2020

Stability and Properties of Double and Triple Helices: Dramatic Effects of RNA or DNA Backbone Composition

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12 December 2020

E-cadherin expression is silenced by DNA hypermethylation in human breast and prostate carcinomas

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12 December 2020

From bacteria to humans, chromatin to elongation, and activation to repression: The expanding roles of noncoding RNAs in regulating transcription

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12 December 2020

XIST RNA associates with specific regions of the inactive X chromatin

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12 December 2020

Identifiers

DOI

10.1002/WRNA.90

1 reference

1 reference

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PubMed publication ID

21823233

1 reference