Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity (Q24629334)

5

object named as

Magdalen Lindeberg

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author name string

Melanie J Filiatrault

1

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Paul V Stodghill

2

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Philip A Bronstein

3

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Simon Moll

4

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George Grills

6

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Peter Schweitzer

7

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Wei Wang

8

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Gary P Schroth

9

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Shujun Luo

10

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Irina Khrebtukova

11

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Yong Yang

12

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Theodore Thannhauser

13

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Bronwyn G Butcher

14

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Samuel Cartinhour

RNA-Seq: a revolutionary tool for transcriptomics

15

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language of work or name

English

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publication date

May 2010

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published in

Journal of Bacteriology

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volume

192

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issue

9

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page(s)

2359-72

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cites work

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

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Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline

7 April 2017

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An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin

7 April 2017

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An internal antisense RNA regulates expression of the photosynthesis gene isiA

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Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds

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Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

7 April 2017

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Rfam: annotating non-coding RNAs in complete genomes

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RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

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The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

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Vector algebra in the analysis of genome-wide expression data

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RNA expression analysis using an antisense Bacillus subtilis genome array

7 April 2017

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Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp

7 April 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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Antisense RNA control in bacteria, phages, and plasmids

27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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30 May 2018

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30 May 2018

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30 May 2018

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30 May 2018

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/20190049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Repetitive extragenic palindromic sequences in the Pseudomonas syringae pv. tomato DC3000 genome: extragenic signals for genome reannotation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20190049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20190049

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JB.01445-09

1 reference

3916499

3916499

1 reference

1 reference

1 reference