Stem cell transcriptome profiling via massive-scale mRNA sequencing (Q28282295)

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Andrew C Perkins

object named as

Andrew C Perkins

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Sean Grimmond

object named as

Sean M Grimmond

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author name string

Alistair R R Forrest

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Gabriel Kolle

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Brooke B A Gardiner

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Geoffrey J Faulkner

5

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Mellissa K Brown

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Darrin F Taylor

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Anita L Steptoe

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Shivangi Wani

9

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Graeme Bethel

10

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Alan J Robertson

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Stephen J Bruce

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Clarence C Lee

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Swati S Ranade

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Heather E Peckham

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Jonathan M Manning

ESTablishing a human transcript map

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language of work or name

English

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publication date

July 2008

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published in

Nature Methods

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volume

5

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issue

7

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page(s)

613-9

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cites work

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

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Complex Loci in human and mouse genomes

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

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Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

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Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms

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Serial analysis of gene expression

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Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

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Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy

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Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture

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Transcriptional profiling of mouse and human ES cells identifies SLAIN1, a novel stem cell gene.

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A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

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AceView: a comprehensive cDNA-supported gene and transcripts annotation

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Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized

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Extending assembly of short DNA sequences to handle error.

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BLAT—The BLAST-Like Alignment Tool

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A gene regulatory network in mouse embryonic stem cells

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

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The transcriptional landscape of the yeast genome defined by RNA sequencing

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In vitro differentiation of murine embryonic stem cells toward a renal lineage

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Amplification of cDNA ends based on template-switching effect and step-out PCR.

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Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method

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CapSelect: a highly sensitive method for 5' CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs.

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Accurate multiplex polony sequencing of an evolved bacterial genome

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

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Identifiers

DOI

10.1038/NMETH.1223

1 reference

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

154720

1048586936

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154720

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

1 reference