Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method (Q24630576)

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English	Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method	scientific article

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scholarly article

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Europe PubMed Central

21 June 2017

Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method (English)

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Europe PubMed Central

21 June 2017

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Li Deng

2

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Melissa Beth Duhaime

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Melissa B Duhaime

1

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author name string

Bonnie T Poulos

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Europe PubMed Central

21 June 2017

Matthew B Sullivan

4

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Europe PubMed Central

21 June 2017

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publication date

20 June 2012

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Europe PubMed Central

21 June 2017

Environmental Microbiology

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Europe PubMed Central

21 June 2017

14

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Europe PubMed Central

21 June 2017

9

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Europe PubMed Central

21 June 2017

2526-2537

1 reference

Europe PubMed Central

21 June 2017

Unlocking short read sequencing for metagenomics

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Whole genome amplification and de novo assembly of single bacterial cells

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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7 April 2017

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

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7 April 2017

The marine viromes of four oceanic regions

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7 April 2017

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3466414

7 April 2017

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

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7 April 2017

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

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7 April 2017

Transfer of photosynthesis genes to and from Prochlorococcus viruses

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7 April 2017

Genomic analysis of uncultured marine viral communities

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7 April 2017

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Prodigal: prokaryotic gene recognition and translation initiation site identification

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

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Functional metagenomic profiling of nine biomes

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10 May 2017

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

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27 September 2017

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA

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27 September 2017

Linear amplification for deep sequencing

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27 September 2017

Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method

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27 September 2017

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

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27 September 2017

Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1

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27 September 2017

Analysis of high-throughput sequencing and annotation strategies for phage genomes

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27 September 2017

Current insights into phage biodiversity and biogeography

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27 September 2017

Assembling the marine metagenome, one cell at a time

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27 September 2017

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

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27 September 2017

Modeling the fitness consequences of a cyanophage-encoded photosynthesis gene

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27 September 2017

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

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27 September 2017

The microbial engines that drive Earth's biogeochemical cycles.

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27 September 2017

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

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27 September 2017

Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification

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27 September 2017

Sequencing genomes from single cells by polymerase cloning

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27 September 2017

Environmental whole-genome amplification to access microbial populations in contaminated sediments

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27 September 2017

Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium

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27 September 2017

Genomic islands and the ecology and evolution of Prochlorococcus.

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27 September 2017

Photosynthesis genes in marine viruses yield proteins during host infection

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27 September 2017

Marine ecosystems: bacterial photosynthesis genes in a virus

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27 September 2017

Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'

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27 September 2017

Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation

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Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

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Archaebacterial DNA polymerases tightly bind uracil-containing DNA.

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DNA purification and isolation using a solid-phase

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A simple and efficient method for concentration of ocean viruses by chemical flocculation

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Explaining microbial population genomics through phage predation.

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Evaluation of Phi29-based whole-genome amplification for microarray-based comparative genomic hybridisation.

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Genomic island variability facilitates Prochlorococcus-virus coexistence

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Carrying photosynthesis genes increases ecological fitness of cyanophage in silico

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DNA stable-isotope probing.

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Multiple displacement amplification compromises quantitative analysis of metagenomes

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Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2

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7 January 2021

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10.1111/J.1462-2920.2012.02791.X

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Europe PubMed Central

21 June 2017

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

21 June 2017

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