ELM: the status of the 2010 eukaryotic linear motif resource (Q24644402)

3

0 references

Manuela Helmer-Citterich

21

0 references

Francesca Diella

2

0 references

Claudia Chica

Claudia Chica

10

0 references

Robert J Weatheritt

Robert J Weatheritt

14

0 references

Norman Davey

Norman E Davey

12

0 references

Toby J. Gibson

Toby J Gibson

23

0 references

Rein Aasland

20

Rein Aasland

0 references

Leszek Rychlewski

18

Leszek Rychlewski

0 references

Cathryn M Gould

1

Cathryn M Gould

0 references

Sushama Michael

7

Sushama Michael

0 references

Aidan Budd

15

Aidan Budd

0 references

Niall Haslam

13

Niall Haslam

0 references

Francesca Diella

2

Francesca Diella

0 references

Gilles Travé

19

Gilles Travé

0 references

Rune Linding

22

Rune Linding

0 references

author name string

Pål Puntervoll

4

0 references

Sophie Chabanis-Davidson

6

0 references

Ahmed Sayadi

8

0 references

Jan Christian Bryne

9

0 references

Markus Seiler

11

0 references

Tim Hughes

16

0 references

Jakub Pas

A structure filter for the Eukaryotic Linear Motif Resource

17

0 references

language of work or name

English

0 references

publication date

January 2010

0 references

published in

Nucleic Acids Research

0 references

volume

38

0 references

issue

Database issue

0 references

page(s)

D167-80

0 references

cites work

1 reference

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An EB1-binding motif acts as a microtubule tip localization signal

7 April 2017

1 reference

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Prediction of protein binding regions in disordered proteins

7 April 2017

1 reference

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

7 April 2017

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Minimotif miner 2nd release: a database and web system for motif search

7 April 2017

1 reference

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SMART 6: recent updates and new developments

7 April 2017

1 reference

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STRING 8--a global view on proteins and their functional interactions in 630 organisms

7 April 2017

1 reference

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InterPro: the integrative protein signature database

7 April 2017

1 reference

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Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions

7 April 2017

1 reference

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Loss of CHFR in human mammary epithelial cells causes genomic instability by disrupting the mitotic spindle assembly checkpoint

7 April 2017

1 reference

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Viral infection and human disease--insights from minimotifs

7 April 2017

1 reference

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Structure of the Eps15-stonin2 complex provides a molecular explanation for EH-domain ligand specificity

7 April 2017

1 reference

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The Pfam protein families database

7 April 2017

1 reference

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7 April 2017

The 20 years of PROSITE

1 reference

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The Gene Ontology project in 2008

7 April 2017

1 reference

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U2AF-homology motif interactions are required for alternative splicing regulation by SPF45

7 April 2017

1 reference

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MINT: the Molecular INTeraction database

7 April 2017

1 reference

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DILIMOT: discovery of linear motifs in proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

The EH1 motif in metazoan transcription factors

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Systematic discovery of new recognition peptides mediating protein interaction networks

7 April 2017

1 reference

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Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

7 April 2017

1 reference

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ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

7 April 2017

The Protein Data Bank

1 reference

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A shared docking motif in TRF1 and TRF2 used for differential recruitment of telomeric proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Structure-function relationship of CAP-Gly domains

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Profile hidden Markov models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Nuclear targeting sequences--a consensus?

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Cyclin is degraded by the ubiquitin pathway

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

High-throughput phosphotyrosine profiling using SH2 domains

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

The structural basis for the interaction between nonsense-mediated mRNA decay factors UPF2 and UPF3

7 April 2017

1 reference

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Assembly of Cell Regulatory Systems Through Protein Interaction Domains

7 April 2017

1 reference

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Human Protein Reference Database--2009 update

7 April 2017

1 reference

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Recent developments in the MAFFT multiple sequence alignment program

7 April 2017

1 reference

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BioMart--biological queries made easy

7 April 2017

1 reference

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Database resources of the National Center for Biotechnology Information

7 April 2017

1 reference

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The Universal Protein Resource (UniProt) 2009

7 April 2017

1 reference

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IntAct--open source resource for molecular interaction data

7 April 2017

1 reference

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PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

7 April 2017

1 reference

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The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Linear Motif Atlas for Phosphorylation-Dependent Signaling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Molecular machines or pleiomorphic ensembles: signaling complexes revisited

10 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Cell regulation: determined to signal discrete cooperation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Dynamic interactions of proteins in complex networks: a more structured view.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Predicting intrinsic disorder in proteins: an overview

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Evidence for the concerted evolution between short linear protein motifs and their flanking regions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

An active registry for bioinformatics web services

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

An integrin-alpha4-14-3-3zeta-paxillin ternary complex mediates localised Cdc42 activity and accelerates cell migration

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Sending signals dynamically

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Accurate prediction of peptide binding sites on protein surfaces.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Kinome signaling through regulated protein-protein interactions in normal and cancer cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Structural conservation of a short, functional, peptide-sequence motif

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Linking folding and binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Capturing protein tails by CAP-Gly domains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Protein cooperation: from neurons to networks.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Cooperativity and biological complexity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Contextual specificity in peptide-mediated protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Understanding eukaryotic linear motifs and their role in cell signaling and regulation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

A new protein linear motif benchmark for multiple sequence alignment software

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

A careful disorderliness in the proteome: sites for interaction and targets for future therapies.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

What are artificial neural networks?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Human cytomegalovirus regulates surface expression of the viral protein UL18 by means of two motifs present in the cytoplasmic tail.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Predicting protein disorder and induced folding: from theoretical principles to practical applications.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Local structural disorder imparts plasticity on linear motifs.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Peptides mediating interaction networks: new leads at last

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

RGD, the Rho'd to cell spreading

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

The 3of5 web application for complex and comprehensive pattern matching in protein sequences

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

A neural strategy for the inference of SH3 domain-peptide interaction specificity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

A single pair of acidic residues in the kinase major groove mediates strong substrate preference for P-2 or P-5 arginine in the AGC, CAMK, and STE kinase families

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

SIRW: A web server for the Simple Indexing and Retrieval System that combines sequence motif searches with keyword searches

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

A myristoyl/phosphotyrosine switch regulates c-Abl

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Protein sequence similarity searches using patterns as seeds

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Peptide sequences that target cytosolic proteins for lysosomal proteolysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

The retention signal for soluble proteins of the endoplasmic reticulum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Towards a theory of biological robustness

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808914

Peptide-mediated interactions in biological systems: new discoveries and applications

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

Cooperativity in macromolecular assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

Phospho.ELM: a database of phosphorylation sites--update 2008.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

A computational strategy for the prediction of functional linear peptide motifs in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

A peptide motif in Raver1 mediates splicing repression by interaction with the PTB RRM2 domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

Molecular switches involving the AP-2 beta2 appendage regulate endocytic cargo selection and clathrin coat assembly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

Linear motifs in the C-terminus of D. melanogaster cryptochrome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

3did Update: domain-domain and peptide-mediated interactions of known 3D structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1016

journals/nar/GouldDVPGCMSBCSDHWBHPRTAHLG10

21 January 2018

Identifiers

DOI

10.1093/NAR/GKP1016

0 references

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02