The ankyrin repeat as molecular architecture for protein recognition (Q24646394)

Europe PubMed Central

title

The ankyrin repeat as molecular architecture for protein recognition (English)

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author name string

Leila K Mosavi

1

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Tobin J Cammett

2

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Daniel C Desrosiers

3

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Zheng-Yu Peng

The Muscle Ankyrin Repeat Proteins: CARP, ankrd2/Arpp and DARP as a Family of Titin Filament-based Stress Response Molecules

4

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language of work or name

English

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publication date

June 2004

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published in

Protein Science

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volume

13

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issue

6

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page(s)

1435-48

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cites work

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Rh-RhAG/ankyrin-R, a new interaction site between the membrane bilayer and the red cell skeleton, is impaired by Rh(null)-associated mutation

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Designed to be stable: crystal structure of a consensus ankyrin repeat protein

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MAGE-A4 interacts with the liver oncoprotein gankyrin and suppresses its tumorigenic activity

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Consensus-derived structural determinants of the ankyrin repeat motif

7 April 2017

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Crystal structure of a 12 ANK repeat stack from human ankyrinR.

7 April 2017

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Novel insights into the INK4-CDK4/6-Rb pathway: counter action of gankyrin against INK4 proteins regulates the CDK4-mediated phosphorylation of Rb

7 April 2017

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The telomeric poly(ADP-ribose) polymerase, tankyrase 1, contains multiple binding sites for telomeric repeat binding factor 1 (TRF1) and a novel acceptor, 182-kDa tankyrase-binding protein (TAB182)

7 April 2017

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Crystal structure of the ankyrin repeat domain of Bcl-3: a unique member of the IkappaB protein family.

7 April 2017

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Analysis of ankyrin repeats reveals how a single point mutation in RFXANK results in bare lymphocyte syndrome

7 April 2017

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Phosphorylation of a novel myosin binding subunit of protein phosphatase 1 reveals a conserved mechanism in the regulation of actin cytoskeleton

7 April 2017

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Identification of a novel human tankyrase through its interaction with the adaptor protein Grb14

7 April 2017

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MAML1, a human homologue of Drosophila mastermind, is a transcriptional co-activator for NOTCH receptors

7 April 2017

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Characterization of ANKRA, a novel ankyrin repeat protein that interacts with the cytoplasmic domain of megalin

7 April 2017

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Associations and interactions between bare lymphocyte syndrome factors

7 April 2017

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SKIP, a CBF1-associated protein, interacts with the ankyrin repeat domain of NotchIC To facilitate NotchIC function

7 April 2017

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Integrin-linked kinase is localized to cell-matrix focal adhesions but not cell-cell adhesion sites and the focal adhesion localization of integrin-linked kinase is regulated by the PINCH-binding ANK repeats

7 April 2017

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NF-kappaB subunit p65 binds to 53BP2 and inhibits cell death induced by 53BP2

7 April 2017

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Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50

7 April 2017

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The Bcl-3 oncoprotein acts as a bridging factor between NF-kappaB/Rel and nuclear co-regulators

7 April 2017

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INK4 cell cycle inhibitors direct transcriptional inactivation of NF-kappaB

7 April 2017

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The LIM-only protein PINCH directly interacts with integrin-linked kinase and is recruited to integrin-rich sites in spreading cells

7 April 2017

1 reference

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Association of protein-tyrosine phosphatase PTP-BAS with the transcription-factor-inhibitory protein IkappaBalpha through interaction between the PDZ1 domain and ankyrin repeats

7 April 2017

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Structure of an IkappaBalpha/NF-kappaB complex

7 April 2017

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Tankyrase, a poly(ADP-ribose) polymerase at human telomeres

7 April 2017

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A gene encoding a novel RFX-associated transactivator is mutated in the majority of MHC class II deficiency patients

7 April 2017

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Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16INK4a

7 April 2017

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SMART, a simple modular architecture research tool: identification of signaling domains

7 April 2017

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I kappa B epsilon, a novel member of the I kappa B family, controls RelA and cRel NF-kappa B activity

7 April 2017

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Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2

7 April 2017

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The p53-binding protein 53BP2 also interacts with Bc12 and impedes cell cycle progression at G2/M

7 April 2017

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A new regulatory motif in cell-cycle control causing specific inhibition of cyclin D/CDK4

7 April 2017

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p15INK4B is a potential effector of TGF-beta-induced cell cycle arrest

7 April 2017

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Two cellular proteins that bind to wild-type but not mutant p53

7 April 2017

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Novel INK4 proteins, p19 and p18, are specific inhibitors of the cyclin D-dependent kinases CDK4 and CDK6

7 April 2017

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Deltex acts as a positive regulator of Notch signaling through interactions with the Notch ankyrin repeats

7 April 2017

1 reference

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Sequence logos: a new way to display consensus sequences

7 April 2017

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7 April 2017

1 reference

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Structure and stability of the ankyrin domain of the Drosophila Notch receptor

7 April 2017

1 reference

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X-ray crystal structure of an IkappaBbeta x NF-kappaB p65 homodimer complex

7 April 2017

1 reference

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Solution structure of the focal adhesion adaptor PINCH LIM1 domain and characterization of its interaction with the integrin-linked kinase ankyrin repeat domain

7 April 2017

1 reference

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Structural analysis of WW domains and design of a WW prototype

7 April 2017

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The crystal structure of the IkappaBalpha/NF-kappaB complex reveals mechanisms of NF-kappaB inactivation

7 April 2017

1 reference

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The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA

7 April 2017

1 reference

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A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

7 April 2017

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The Pfam protein families database

7 April 2017

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CDK inhibitors: positive and negative regulators of G1-phase progression

7 April 2017

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Regulation of transcription at the Saccharomyces cerevisiae start transition by Stb1, a Swi6-binding protein

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Association of transcription factor YY1 with the high molecular weight Notch complex suppresses the transactivation activity of Notch

7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Identification of a tankyrase-binding motif shared by IRAP, TAB182, and human TRF1 but not mouse TRF1. NuMA contains this RXXPDG motif and is a novel tankyrase partner

7 April 2017

1 reference

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7 April 2017

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Gankyrin is an ankyrin-repeat oncoprotein that interacts with CDK4 kinase and the S6 ATPase of the 26 S proteasome

7 April 2017

1 reference

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Synaptic scaffolding proteins in rat brain. Ankyrin repeats of the multidomain Shank protein family interact with the cytoskeletal protein alpha-fodrin

7 April 2017

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7 April 2017

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Tankyrase is a golgi-associated mitogen-activated protein kinase substrate that interacts with IRAP in GLUT4 vesicles

7 April 2017

1 reference

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A minimum folding unit in the ankyrin repeat protein p16(INK4)

7 April 2017

1 reference

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Functional interaction between the mouse notch1 intracellular region and histone acetyltransferases PCAF and GCN5

7 April 2017

1 reference

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The ankyrin repeat-containing adaptor protein Tvl-1 is a novel substrate and regulator of Raf-1

7 April 2017

1 reference

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Detection of internal repeats: how common are they?

7 April 2017

1 reference

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CARP, a cardiac ankyrin repeat protein, is downstream in the Nkx2-5 homeobox gene pathway

7 April 2017

1 reference

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Notch3 mutations in CADASIL, a hereditary adult-onset condition causing stroke and dementia

7 April 2017

1 reference

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Cardiac myotrophin exhibits rel/NF-kappa B interacting activity in vitro

7 April 2017

1 reference

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Protein phosphatase 1 interacts with p53BP2, a protein which binds to the tumour suppressor p53

7 April 2017

1 reference

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7 April 2017

1 reference

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Hundreds of ankyrin-like repeats in functionally diverse proteins: mobile modules that cross phyla horizontally?

7 April 2017

1 reference

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Specific inhibition of RelB/p52 transcriptional activity by the C-terminal domain of p100

7 April 2017

1 reference

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Expression cloning of 2-5A-dependent RNAase: a uniquely regulated mediator of interferon action

7 April 2017

1 reference

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Sharpin, a novel postsynaptic density protein that directly interacts with the shank family of proteins

7 April 2017

1 reference

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A requirement for ankyrin binding to clathrin during coated pit budding

7 April 2017

1 reference

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Identification of a novel ankyrin isoform (AnkG190) in kidney and lung that associates with the plasma membrane and binds alpha-Na, K-ATPase

7 April 2017

1 reference

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Recent improvements to the SMART domain-based sequence annotation resource

7 April 2017

1 reference

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Evolutionarily conserved pathways of energetic connectivity in protein families

7 April 2017

1 reference

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Reprogramming control of an allosteric signaling switch through modular recombination

7 April 2017

1 reference

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The folding and design of repeat proteins: reaching a consensus

27 September 2017

1 reference

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Designing repeat proteins: well-expressed, soluble and stable proteins from combinatorial libraries of consensus ankyrin repeat proteins.

27 September 2017

1 reference

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Novel mutations in the RFXANK gene: RFX complex containing in-vitro-generated RFXANK mutant binds the promoter without transactivating MHC II.

27 September 2017

1 reference

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The N- and C-terminal regions of RBP-J interact with the ankyrin repeats of Notch1 RAMIC to activate transcription

27 September 2017

1 reference

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Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions

27 September 2017

1 reference

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LAG-3 is a putative transcriptional activator in the C. elegans Notch pathway

27 September 2017

1 reference

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Interaction between CD44 and the repeat domain of ankyrin promotes hyaluronic acid-mediated ovarian tumor cell migration

27 September 2017

1 reference

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A census of protein repeats

27 September 2017

1 reference

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Functional evaluation of tumour-specific variants of p16INK4a/CDKN2A: correlation with protein structure information.

27 September 2017

1 reference

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Functional reassessment of P16 variants using a transfection-based assay

27 September 2017

1 reference

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Down-regulation of the INK4 family of cyclin-dependent kinase inhibitors by tax protein of HTLV-1 through two distinct mechanisms

27 September 2017

1 reference

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Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene

27 September 2017

1 reference

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Cloning and functional characterization of mouse IkappaBepsilon

27 September 2017

1 reference

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Involvement of RBP-J in biological functions of mouse Notch1 and its derivatives.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Tumor suppressor p16INK4A: structural characterization of wild-type and mutant proteins by NMR and circular dichroism

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Temperature-sensitive mutants of p16CDKN2 associated with familial melanoma

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

The Saccharomyces cerevisiae Start-specific transcription factor Swi4 interacts through the ankyrin repeats with the mitotic Clb2/Cdc28 kinase and through its conserved carboxy terminus with Swi6.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

HTLV-1 Tax protein interacts with cyclin-dependent kinase inhibitor p16INK4A and counteracts its inhibitory activity towards CDK4.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Association of the brain anion exchanger, AE3, with the repeat domain of ankyrin.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Brain ankyrin. A membrane-associated protein with binding sites for spectrin, tubulin, and the cytoplasmic domain of the erythrocyte anion channel

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Analysis of cDNA for human erythrocyte ankyrin indicates a repeated structure with homology to tissue-differentiation and cell-cycle control proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

The ankyrin repeat domains of the NF-kappa B precursor p105 and the protooncogene bcl-3 act as specific inhibitors of NF-kappa B DNA binding

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Candidate proto-oncogene bcl-3 encodes a subunit-specific inhibitor of transcription factor NF-kappa B

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Characterization of the Drosophila cactus locus and analysis of interactions between cactus and dorsal proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Mapping the binding site on ankyrin for the voltage-dependent sodium channel from brain

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Tumour-derived p16 alleles encoding proteins defective in cell-cycle inhibition

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Defective folding of mutant p16(INK4) proteins encoded by tumor-derived alleles.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Ankyrin-binding proteins related to nervous system cell adhesion molecules: candidates to provide transmembrane and intercellular connections in adult brain

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

p105 and p98 precursor proteins play an active role in NF-kappa B-mediated signal transduction

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

NF-kappa B precursor p100 inhibits nuclear translocation and DNA binding of NF-kappa B/rel-factors.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Ankyrin binding activity shared by the neurofascin/L1/NrCAM family of nervous system cell adhesion molecules

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Specific 33-residue repeat(s) of erythrocyte ankyrin associate with the anion exchanger

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

The precursor of NF-kappa B p50 has I kappa B-like functions

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

I kappa B gamma, a 70 kd protein identical to the C-terminal half of p110 NF-kappa B: a new member of the I kappa B family

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Structure-based substitutions for increased solubility of a designed protein

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Limits of cooperativity in a structurally modular protein: response of the Notch ankyrin domain to analogous alanine substitutions in each repeat

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Equilibrium folding and stability of myotrophin: a model ankyrin repeat protein

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Studies of the ankyrin repeats of the Drosophila melanogaster Notch receptor. 2. Solution stability and cooperativity of unfolding

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Functional impairment of melanoma-associated p16(INK4a) mutants in melanoma cells despite retention of cyclin-dependent kinase 4 binding.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Functional analysis of the protein-interacting domains of chloroplast SRP43.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

From DNA sequence to improved functionality: using protein sequence comparisons to rapidly design a thermostable consensus phytase

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

The p16INK4a/CDKN2A tumor suppressor and its relatives.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

Cytosolic interaction between deltex and Notch ankyrin repeats implicates deltex in the Notch signaling pathway.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

The anion exchanger and Na+K(+)-ATPase interact with distinct sites on ankyrin in in vitro assays

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279977

The role of interhelical ionic interactions in controlling protein folding and stability. De novo designed synthetic two-stranded alpha-helical coiled-coils

28 November 2018

1 reference

12 December 2020

I kappa B-beta regulates the persistent response in a biphasic activation of NF-kappa B

1 reference

12 December 2020

Retinoblastoma-protein-dependent cell-cycle inhibition by the tumour suppressor p16

1 reference

12 December 2020

p16 proteins from melanoma-prone families are deficient in binding to Cdk4

1 reference

12 December 2020

Mechanism for binding site diversity on ankyrin. Comparison of binding sites on ankyrin for neurofascin and the Cl-/HCO3- anion exchanger

1 reference

12 December 2020

A bipartite model of 2-5A-dependent RNase L

1 reference

12 December 2020

Interaction of myosin phosphatase target subunit 1 with the catalytic subunit of type 1 protein phosphatase

1 reference

12 December 2020

Stability and folding of the tumour suppressor protein p16

1 reference

12 December 2020

1 reference

12 December 2020

Design and characterization of a hyperstable p16INK4a that restores Cdk4 binding activity when combined with oncogenic mutations

1 reference

12 December 2020

The membrane-binding domain of ankyrin contains four independently folded subdomains, each comprised of six ankyrin repeats

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.03554604

1 reference

release_pyuqbirbrbejhkcegvtdjllgs4

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pyuqbirbrbejhkcegvtdjllgs4

24 November 2022

mapped directly with Wikidata item

1 reference

1 reference

PubMed publication ID

15152081

1 reference