Histone modifications and nuclear architecture: a review (Q24647743)

Europe PubMed Central

title

Histone modifications and nuclear architecture: a review (English)

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Eva Bártová

1

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Jana Krejcí

2

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Andrea Harnicarová

3

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Gabriela Galiová

4

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Stanislav Kozubek

Journal of Histochemistry and Cytochemistry

5

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language of work or name

English

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publication date

August 2008

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published in

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volume

56

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issue

8

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page(s)

711-21

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cites work

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A chromosomal memory triggered by Xist regulates histone methylation in X inactivation

7 April 2017

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Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

7 April 2017

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Synergism of Xist RNA, DNA methylation, and histone hypoacetylation in maintaining X chromosome inactivation

7 April 2017

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A tale of histone modifications

7 April 2017

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HP1gamma associates with euchromatin and heterochromatin in mammalian nuclei and chromosomes

7 April 2017

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Active and inactive genes localize preferentially in the periphery of chromosome territories

7 April 2017

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Human CENP-A contains a histone H3 related histone fold domain that is required for targeting to the centromere

7 April 2017

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Nuclear lamins: building blocks of nuclear architecture

7 April 2017

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Chromosome territories, nuclear architecture and gene regulation in mammalian cells

7 April 2017

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Chromatin modifications and their function

7 April 2017

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Regulation of histone methylation by demethylimination and demethylation

7 April 2017

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Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin

7 April 2017

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Signaling to chromatin through histone modifications

7 April 2017

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Localization and phosphorylation of HP1 proteins during the cell cycle in mammalian cells

7 April 2017

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Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states

7 April 2017

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The diverse functions of histone lysine methylation

7 April 2017

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Rb targets histone H3 methylation and HP1 to promoters

7 April 2017

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Differentiation of human embryonic stem cells induces condensation of chromosome territories and formation of heterochromatin protein 1 foci

7 April 2017

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Nucleoplasmic lamins and their interaction partners, LAP2alpha, Rb, and BAF, in transcriptional regulation.

28 September 2017

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DNA methylation affects nuclear organization, histone modifications, and linker histone binding but not chromatin compaction

28 September 2017

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Active genes at the nuclear pore complex.

28 September 2017

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Proteins that associate with lamins: many faces, many functions.

28 September 2017

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Biochemistry meets nuclear architecture: multicolor immuno-FISH for co-localization analysis of chromosome segments and differentially expressed gene loci with various histone methylations.

28 September 2017

1 reference

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The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Dynamic and selective interactions of the transcriptional corepressor TIF1 beta with the heterochromatin protein HP1 isotypes during cell differentiation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Genetic and epigenetic regulators of pluripotency

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

28 September 2017

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Differentiation-specific association of HP1alpha and HP1beta with chromocentres is correlated with clustering of TIF1beta at these sites

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Chromosome organization: new facts, new models

28 September 2017

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Transcription factories: structures conserved during differentiation and evolution

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Distinct nuclear arrangement of active and inactive c-myc genes in control and differentiated colon carcinoma cells

28 September 2017

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Mutant nuclear lamin A leads to progressive alterations of epigenetic control in premature aging

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Chromosome territories--a functional nuclear landscape.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Epigenetic therapy of cancer: past, present and future

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Nuclear levels and patterns of histone H3 modification and HP1 proteins after inhibition of histone deacetylases.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The effects of histone deacetylase inhibitors on heterochromatin: implications for anticancer therapy?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Methyl CpG-binding proteins induce large-scale chromatin reorganization during terminal differentiation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Inhibitors of histone deacetylases alter kinetochore assembly by disrupting pericentromeric heterochromatin.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Relationship between histone H3 lysine 9 methylation, transcription repression, and heterochromatin protein 1 recruitment.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Histone hypomethylation is an indicator of epigenetic plasticity in quiescent lymphocytes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Active genes dynamically colocalize to shared sites of ongoing transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Association of the transcriptional corepressor TIF1beta with heterochromatin protein 1 (HP1): an essential role for progression through differentiation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Trichostatin A-induced histone acetylation causes decondensation of interphase chromatin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Differential histone H3 Lys-9 and Lys-27 methylation profiles on the X chromosome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Three dimensional analysis of histone methylation patterns in normal and tumor cell nuclei.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Heterochromatin and tri-methylated lysine 20 of histone H4 in animals

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The cell biology of a novel chromosomal RNA: chromosome painting by XIST/Xist RNA initiates a remodeling cascade

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Formation of facultative heterochromatin in the absence of HP1

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

An epigenetic road map for histone lysine methylation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Cell differentiation induces TIF1beta association with centromeric heterochromatin via an HP1 interaction.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The many faces of histone lysine methylation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Histone H3 lysine 9 methylation is an epigenetic imprint of facultative heterochromatin.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Higher-order chromatin structure of human granulocytes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Epigenetic aspects of X-chromosome dosage compensation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Reversible disruption of pericentric heterochromatin and centromere function by inhibiting deacetylases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Spatial relationship between transcription sites and chromosome territories

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

MAP kinase-mediated signalling to nucleosomes and immediate-early gene induction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Differences in the localization and morphology of chromosomes in the human nucleus.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

The organization of replication and transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

X-Inactivation and histone H4 acetylation in embryonic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Surprising deficiency of CENP-B binding sites in African green monkey alpha-satellite DNA: implications for CENP-B function at centromeres

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

A chromomeric model for nuclear and chromosome structure.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Evidence for a nuclear compartment of transcription and splicing located at chromosome domain boundaries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

A chromatin binding site in the tail domain of nuclear lamins that interacts with core histones

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

New sites of methylcytosine-rich DNA detected on metaphase chromosomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

A mechanism of AP-1 suppression through interaction of c-Fos with lamin A/C.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Histone H3 lysine 9 methylation occurs rapidly at the onset of random X chromosome inactivation.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

X-chromosome inactivation in mammals

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Perinuclear localization of chromatin facilitates transcriptional silencing

30 May 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Alterations of nuclear envelope and chromatin organization in mandibuloacral dysplasia, a rare form of laminopathy

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Chromatin changes induced by lamin A/C deficiency and the histone deacetylase inhibitor trichostatin A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Epigenetic regulation of telomere length in mammalian cells by the Suv39h1 and Suv39h2 histone methyltransferases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Nuclear organization of centromeric domains is not perturbed by inhibition of histone deacetylases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Histone acetylation increases chromatin accessibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Cell cycle behavior of human HP1 subtypes: distinct molecular domains of HP1 are required for their centromeric localization during interphase and metaphase

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

The epigenetic magic of histone lysine methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Histone H3 lysine 4 dimethylation is enriched on the inactive sex chromosomes in male meiosis but absent on the inactive X in female somatic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Pre-Lamin A processing is linked to heterochromatin organization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Characterization of the Drosophila melanogaster genome at the nuclear lamina.

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Topology of genes and nontranscribed sequences in human interphase nuclei

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Histone lysine methylation patterns in human cell types are arranged in distinct three-dimensional nuclear zones

21 January 2018

1 reference

https://api.crossref.org/works/10.1369%2FJHC.2008.951251

Distinct patterns of histone methylation and acetylation in human interphase nuclei.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Methylation of histones in myeloid leukemias as a potential marker of granulocyte abnormalities.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2443610

Detection of methylcytosine-rich heterochromatin on banded chromosomes. Application to cells with various status of DNA methylation

28 November 2018

1 reference

12 December 2020

Distribution of ABL and BCR genes in cell nuclei of normal and irradiated lymphocytes

1 reference

12 December 2020

Correlations between sex chromatin and sex chromosomes

1 reference

12 December 2020

Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells

1 reference

12 December 2020

Subchromosomal Positioning of the Epidermal Differentiation Complex (EDC) in Keratinocyte and Lymphoblast Interphase Nuclei

1 reference

12 December 2020

Immunolocalization of HP1 proteins in metaphasic mammalian chromosomes

1 reference

12 December 2020

Identifiers

DOI

10.1369/JHC.2008.951251

1 reference

1 reference

1 reference

PubMed publication ID

18474937

1 reference