Statistical analysis of interface similarity in crystals of homologous proteins (Q24647980)

1

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Adrian A Canutescu

2

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Guoli Wang

3

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Maxim Shapovalov

4

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Zoran Obradovic

5

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language of work or name

English

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publication date

29 August 2008

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number of pages

21

1 reference

Journal of Molecular Biology

inferred from page(s)

published in

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volume

381

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issue

2

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page(s)

487-507

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cites work

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Binding properties and evolution of homodimers in protein-protein interaction networks

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The RUNX1 Runt domain at 1.25A resolution: a structural switch and specifically bound chloride ions modulate DNA binding

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3D domain swapping: a mechanism for oligomer assembly

7 April 2017

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Azide and acetate complexes plus two iron-depleted crystal structures of the di-iron enzyme delta9 stearoyl-acyl carrier protein desaturase. Implications for oxygen activation and catalytic intermediates

7 April 2017

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Conformational changes in nitric oxide synthases induced by chlorzoxazone and nitroindazoles: crystallographic and computational analyses of inhibitor potency

7 April 2017

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The structure of human beta-defensin-1: new insights into structural properties of beta-defensins

7 April 2017

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Crystallographic studies on endothelial nitric oxide synthase complexed with nitric oxide and mechanism-based inhibitors

7 April 2017

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Three-dimensional structure of the Stat3beta homodimer bound to DNA

7 April 2017

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Crystal structure of delta9 stearoyl-acyl carrier protein desaturase from castor seed and its relationship to other di-iron proteins

7 April 2017

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The crystal structure of alpha-bungarotoxin at 2.5 A resolution: relation to solution structure and binding to acetylcholine receptor

7 April 2017

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A mutant T4 lysozyme displays five different crystal conformations

7 April 2017

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Inference of macromolecular assemblies from crystalline state

7 April 2017

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7 April 2017

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Principles of protein-protein interactions

7 April 2017

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 April 2017

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Structures of the yeast ribonucleotide reductase Rnr2 and Rnr4 homodimers

7 April 2017

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Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I.

7 April 2017

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CAPRI: a Critical Assessment of PRedicted Interactions

7 April 2017

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Isolation and mapping of self-assembling protein domains encoded by the Saccharomyces cerevisiae genome using lambda repressor fusions

7 April 2017

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The biogenesis of multivesicular endosomes

7 April 2017

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7 April 2017

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Multilamellar endosome-like compartment accumulates in the yeast vps28 vacuolar protein sorting mutant

7 April 2017

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7 April 2017

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28 September 2017

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So how do you know you have a macromolecular complex?

28 September 2017

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Analytical ultracentrifugation for the study of protein association and assembly

28 September 2017

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Posttranslational modifications in Cu,Zn-superoxide dismutase and mutations associated with amyotrophic lateral sclerosis.

28 September 2017

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A combinatorial score to distinguish biological and nonbiological protein-protein interfaces

28 September 2017

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Finding biologically relevant protein domain interactions: conserved binding mode analysis

28 September 2017

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A mutation in the dimerization domain of filamin c causes a novel type of autosomal dominant myofibrillar myopathy.

28 September 2017

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Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes

28 September 2017

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A novel COL1A1 mutation in infantile cortical hyperostosis (Caffey disease) expands the spectrum of collagen-related disorders

28 September 2017

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PDBML: the representation of archival macromolecular structure data in XML.

28 September 2017

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iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions

28 September 2017

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Identification of the homotypic interaction domain of the core protein of dengue virus type 2.

28 September 2017

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Identification and mapping of self-assembling protein domains encoded by the Escherichia coli K-12 genome by use of lambda repressor fusions.

28 September 2017

1 reference

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Analytical exclusion chromatography

28 September 2017

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Stability and folding of domain proteins

28 September 2017

1 reference

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Superoxide dismutase 1 with mutations linked to familial amyotrophic lateral sclerosis possesses significant activity

28 September 2017

1 reference

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Dissociation of enzyme oligomers: a mechanism for allosteric regulation

28 September 2017

1 reference

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Protein-protein interactions: a review of protein dimer structures

28 September 2017

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Epidermal growth factor induces rapid, reversible aggregation of the purified epidermal growth factor receptor

28 September 2017

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28 September 2017

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Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly

30 May 2018

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Studies of the biological properties of human beta-defensin 1.

30 May 2018

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Biological Units and their Effect upon the Properties and Prediction of Protein–Protein Interactions

28 November 2018

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ProtBuD: a database of biological unit structures of protein families and superfamilies

28 November 2018

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Statistical analysis and prediction of protein-protein interfaces

28 November 2018

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28 November 2018

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PIBASE: a comprehensive database of structurally defined protein interfaces

28 November 2018

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Improved prediction of protein-protein binding sites using a support vector machines approach

28 November 2018

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A dissection of specific and non-specific protein-protein interfaces

28 November 2018

1 reference

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Dissecting subunit interfaces in homodimeric proteins

28 November 2018

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Conservation helps to identify biologically relevant crystal contacts

28 November 2018

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Discriminating between homodimeric and monomeric proteins in the crystalline state

28 November 2018

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PQS: a protein quaternary structure file server

28 November 2018

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28 November 2018

Superoxide dismutases

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12 December 2020

Solution structure of neuronal bungarotoxin determined by two-dimensional NMR spectroscopy: calculation of tertiary structure using systematic homologous model building, dynamical simulated annealing, and restrained molecular dynamics

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12 December 2020

The Relationship Between Sequence and Interaction Divergence in Proteins

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12 December 2020

The Crystal Structure of the C-Terminal Domain of Vps28 Reveals a Conserved Surface Required for Vps20 Recruitment

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12 December 2020

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https://api.crossref.org/works/10.1016%2FJ.JMB.2008.06.002

7 January 2021