PatternLab for proteomics: a tool for differential shotgun proteomics (Q24653597)

Europe PubMed Central

title

PatternLab for proteomics: a tool for differential shotgun proteomics (English)

0 references

author

Valmir Carneiro Barbosa

object named as

Valmir C Barbosa

5

0 references

author name string

Paulo C Carvalho

1

0 references

Juliana S G Fischer

2

0 references

Emily I Chen

3

0 references

John R Yates

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-316

4

0 references

language of work or name

English

0 references

publication date

2008

0 references

published in

BMC Bioinformatics

0 references

volume

9

0 references

page(s)

316

0 references

issue

1

0 references

exact match

0 references

cites work

Processing methods for differential analysis of LC/MS profile data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Determination of the differentially expressed genes in microarray experiments using local FDR

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Probability-based protein identification by searching sequence databases using mass spectrometry data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Detecting differential and correlated protein expression in label-free shotgun proteomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

A proteomic view of the Plasmodium falciparum life cycle

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

The significance of digital gene expression profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors

10 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Performance of a linear ion trap-Orbitrap hybrid for peptide analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Bayesian model averaging: development of an improved multi-class, gene selection and classification tool for microarray data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Application of the GA/KNN method to SELDI proteomics data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Analysis of microarray data using Z score transformation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Optimization of mass spectrometry-compatible surfactants for shotgun proteomics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Differential protein expression patterns obtained by mass spectrometry can aid in the diagnosis of Hodgkin's disease.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

A streamlined platform for high-content functional proteomics of primary human specimens

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Identifying differentially expressed genes from microarray experiments via statistic synthesis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2488363

Biomarker discovery in urine by proteomics

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18644148

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gene Selection for Cancer Classification using Support Vector Machines

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-9-316

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-316

0 references

DBLP publication ID

journals/bmcbi/CarvalhoFCYB08

1 reference

DBLP Dataset 2021-01-02