Comparative genomics of the lactic acid bacteria (Q24678967)

S Kozyavkin

48

0 references

Eric Altermann

E Altermann

32

0 references

Boris G. Mirkin

B Mirkin

5

0 references

David A. Mills

D Mills

50

0 references

Jeff R Broadbent

J Broadbent

40

0 references

Rodolphe Barrangou

R Barrangou

33

0 references

Bart C. Weimer

B Weimer

49

0 references

Igor V. Grigoriev

I Grigoriev

12

0 references

Todd R. Klaenhammer

46

T Klaenhammer

0 references

David M. Goodstein

17

D M Goodstein

0 references

author name string

K Makarova

1

0 references

A Slesarev

2

0 references

Y Wolf

3

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A Sorokin

4

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A Pavlov

7

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N Pavlova

8

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V Karamychev

9

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N Polouchine

10

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V Shakhova

11

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Y Lou

13

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D Rohksar

14

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S Lucas

15

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K Huang

16

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T Hawkins

18

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V Plengvidhya

19

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D Welker

20

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J Hughes

21

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Y Goh

22

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A Benson

23

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K Baldwin

24

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J-H Lee

25

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I Díaz-Muñiz

26

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B Dosti

27

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V Smeianov

28

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W Wechter

29

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R Barabote

30

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G Lorca

31

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B Ganesan

34

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Y Xie

35

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H Rawsthorne

36

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D Tamir

37

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C Parker

38

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F Breidt

39

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R Hutkins

41

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D O'Sullivan

42

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J Steele

43

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G Unlu

44

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M Saier

45

0 references

P Richardson

Proceedings of the National Academy of Sciences of the United States of America

47

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language of work or name

English

0 references

publication date

17 October 2006

0 references

published in

0 references

volume

103

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page(s)

15611-6

0 references

issue

42

0 references

cites work

Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The COG database: an updated version includes eukaryotes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Complete genome sequence of Lactobacillus plantarum WCFS1

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Genome trees constructed using five different approaches suggest new major bacterial clades

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The COG database: new developments in phylogenetic classification of proteins from complete genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

A genomic perspective on protein families

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The origins of genome complexity

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Horizontal gene transfer in prokaryotes: quantification and classification

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Phylogenetic test of the molecular clock and linearized trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Multireplicon genome architecture of Lactobacillus salivarius

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

28 September 2017

Genomes on the shrink

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Reduced content of lysyl-phosphatidylglycerol in the cytoplasmic membrane affects susceptibility to moenomycin, as well as vancomycin, gentamicin, and antimicrobial peptides, in Staphylococcus aureus

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Genome-wide molecular clock and horizontal gene transfer in bacterial evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Genome data mining of lactic acid bacteria: the impact of bioinformatics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Exploration of antimicrobial potential in LAB by genomics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Formation of thiolated nucleosides present in tRNA from Salmonella enterica serovar Typhimurium occurs in two principally distinct pathways.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Glutathione protects Lactococcus lactis against oxidative stress.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Practical implications of lactate and pyruvate metabolism by lactic acid bacteria in food and beverage fermentations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Manganese: elemental defence for a life with oxygen

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Lantibiotics produced by lactic acid bacteria: structure, function and applications.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

The PASTA domain: a beta-lactam-binding domain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Microevolutionary genomics of bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Eco-physiological characterization of soil bacterial populations in different states of growth

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Lineage-specific gene expansions in bacterial and archaeal genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

rRNA operon copy number reflects ecological strategies of bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Acquired antibiotic resistance in lactic acid bacteria from food

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Divercin V41, a new bacteriocin with two disulphide bonds produced by Carnobacterium divergens V41: primary structure and genomic organization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Polyphasic taxonomy, a consensus approach to bacterial systematics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Carbohydrate metabolism in lactic acid bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Manganese and Defenses against Oxygen Toxicity in Lactobacillus plantarum

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Radiation resistance of lactobacilli isolated from radurized meat relative to growth and environment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Applications for biotechnology: present and future improvements in lactic acid bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1622870

Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance.

28 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0607117103

Antimicrobial susceptibility of starter culture bacteria used in Norwegian dairy products

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0607117103

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0607117103

21 January 2018

Identifiers

DOI

10.1073/PNAS.0607117103

1 reference

1169112

ADS bibcode

2006PNAS..10315611M

0 references

1169112

1 reference

1 reference

1 reference