ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes (Q24683920)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

title

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

Hong-Yu Ou

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

author name string

Chun-Ting Zhang

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

language of work or name

English

0 references

publication date

1 March 2003

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

volume

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

page(s)

1780-1789

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

EcoGene: a genome sequence database for Escherichia coli K-12.

1 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Microbial gene identification using interpolated Markov models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Improved microbial gene identification with GLIMMER

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Bacterial start site prediction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Starts of bacterial genes: estimating the reliability of computer predictions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Recognition of protein coding regions in DNA sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Use of the ‘Perceptron’ algorithm to distinguish translational initiation sites inE. coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

The guanine and cytosine content of genomic DNA and bacterial evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Analysis of distribution of bases in the coding sequences by a diagrammatic technique

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

A graphic approach to analyzing codon usage in 1562 Escherichia coli protein coding sequences.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

A probabilistic method for identifying start codons in bacterial genomes.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

A novel bacterial gene-finding system with improved accuracy in locating start codons.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=152858

Identification of protein-coding genes in the genome of Vibrio cholerae with more than 98% accuracy using occurrence frequencies of single nucleotides

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12626720

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Compositional correlation studies among the three different codon positions in 12 bacterial genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12626720

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG254

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json

1 November 2019

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12626720%20AND%20SRC:MED&resulttype=core&format=json