Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. (Q34668657)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

title

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Mikhail Gelfand

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

author name string

D Frishman

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

A Mironov

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

language of work or name

English

0 references

publication date

1 June 1998

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

number of pages

7

1 reference

inferred from page(s)

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

volume

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

page(s)

2941-2947

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

Fast comparison of a DNA sequence with a protein sequence database.

12 November 2019

cites work

1 reference

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GeneMark.hmm: new solutions for gene finding

7 July 2018

1 reference

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Microbial gene identification using interpolated Markov models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Comparison of DNA sequences with protein sequences.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

The complete genome sequence of Escherichia coli K-12

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Prediction of complete gene structures in human genomic DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

The N-end rule: functions, mysteries, uses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Gene recognition via spliced sequence alignment.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Finding genes by computer: the state of the art.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

SRS: information retrieval system for molecular biology data banks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Sequencing and analysis of bacterial genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Identification of protein coding regions by database similarity search

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Quantitative analysis of ribosome binding sites in E.coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

RNA sequence analysis using covariance models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

A hidden Markov model that finds genes in E. coli DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Intrinsic and extrinsic approaches for detecting genes in a bacterial genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Prediction of function in DNA sequence analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Information content of binding sites on nucleotide sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Sequence and transcription mapping of Bacillus subtilis competence genes comB and comA, one of which is related to a family of bacterial regulatory determinants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

What constitutes the signal for the initiation of protein synthesis on Escherichia coli mRNAs?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Assessment of protein coding measures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

Large scale bacterial gene discovery by similarity search.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2F26.12.2941

Deriving ribosomal binding site (RBS) statistical models from unannotated DNA sequences and the use of the RBS model for N-terminal prediction.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=147632

26 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F26.12.2941

Markedly unbiased codon usage in Bacillus subtilis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9611239

12 December 2020

inferred from PubMed ID database lookup

The PIR-International Protein Sequence Database

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9611239

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/26.12.2941

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

release_pexmkcpsbbgn3ez3n4xfo7cbae

12 November 2019

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pexmkcpsbbgn3ez3n4xfo7cbae

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

PubMed publication ID

9611239

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9611239%20AND%20SRC:MED&resulttype=core&format=json