Variation in the strength of selected codon usage bias among bacteria (Q24792094)

5

object named as

R Elizabeth Sockett

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Elizabeth Bailes

2

object named as

Elizabeth Bailes

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author name string

Russell J Grocock

3

0 references

John F Peden

Solving the riddle of codon usage preferences: a test for translational selection

4

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

4

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page(s)

1141-53

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cites work

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Codon usage: mutational bias, translational selection, or both?

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Codon selection in yeast

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

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7 April 2017

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7 April 2017

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The rapid generation of mutation data matrices from protein sequences

7 April 2017

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Inferring the historical patterns of biological evolution

7 April 2017

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Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination

7 April 2017

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7 April 2017

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Asymmetric substitution patterns in the two DNA strands of bacteria

7 April 2017

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7 April 2017

How clonal are bacteria?

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Codon usage and tRNA content in unicellular and multicellular organisms

7 April 2017

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High genetic diversity revealed by variable-number tandem repeat genotyping and analysis of hsp65 gene polymorphism in a large collection of "Mycobacterium canettii" strains indicates that the M. tuberculosis complex is a recently emerged clone of "

7 April 2017

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On the genetic basis of variation and heterogeneity of DNA base composition

28 September 2017

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Genome Evolution in an Insect Cell: Distinct Features of an Ant-Bacterial Partnership

28 September 2017

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Use and misuse of correspondence analysis in codon usage studies

28 September 2017

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Recombination within natural populations of pathogenic bacteria: short-term empirical estimates and long-term phylogenetic consequences

28 September 2017

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28 September 2017

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The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation

28 September 2017

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Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces

28 September 2017

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rRNA operon copy number reflects ecological strategies of bacteria

28 September 2017

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Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

28 September 2017

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Codon usage and lateral gene transfer in Bacillus subtilis

28 September 2017

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Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

28 September 2017

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Free recombination within Helicobacter pylori

28 September 2017

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Codon usage in the Mycobacterium tuberculosis complex

28 September 2017

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Codon usage and base composition in Rickettsia prowazekii

28 September 2017

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Borrelia burgdorferi is clonal: implications for taxonomy and vaccine development.

28 September 2017

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Codon catalog usage is a genome strategy modulated for gene expressivity

28 September 2017

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ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

28 September 2017

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The guanine and cytosine content of genomic DNA and bacterial evolution

28 September 2017

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Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity

28 September 2017

1 reference

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Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549432

An evolutionary perspective on synonymous codon usage in unicellular organisms

28 September 2017

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Switches in species-specific codon preferences: the influence of mutation biases

28 September 2017

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Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution

28 September 2017

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The selection-mutation-drift theory of synonymous codon usage

28 September 2017

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The nucleotide sequence of phenylalanine tRNA from Bacillus subtilis

28 September 2017

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Evidence for genetic drift in endosymbionts (Buchnera): analyses of protein-coding genes.

28 September 2017

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Coevolution of codon usage and transfer RNA abundance

30 May 2018

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Codon usage in the G+C-rich Streptomyces genome

30 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=549432

Growth rate-optimised tRNA abundance and codon usage.

30 May 2018

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Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.

30 May 2018

1 reference

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Translational selection is operative for synonymous codon usage in Clostridium perfringens and Clostridium acetobutylicum.

28 November 2018

1 reference

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Synonymous codon usage in Pseudomonas aeruginosa PA01.

28 November 2018

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28 November 2018

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28 November 2018

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Identifiers

DOI

10.1093/NAR/GKI242

1 reference

1 reference

1 reference

PubMed publication ID

15728743

1 reference