Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression (Q24797334)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15774026%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

title

Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression (English)

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9 January 2020

1

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9 January 2020

John F Atkins

5

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9 January 2020

author name string

Andrew W Hammer

2

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9 January 2020

Jiadong Zhou

3

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9 January 2020

Raymond F Gesteland

4

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9 January 2020

language of work or name

English

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publication date

15 February 2005

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9 January 2020

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9 January 2020

volume

6

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9 January 2020

issue

3

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9 January 2020

page(s)

R25

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Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

9 January 2020

cites work

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7 April 2017

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Transcription termination at intrinsic terminators: the role of the RNA hairpin

7 April 2017

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The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences

7 April 2017

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Basic local alignment search tool

7 April 2017

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7 April 2017

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Whole genome sequencing of meticillin-resistant Staphylococcus aureus

7 April 2017

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Frameshift mutants of beta amyloid precursor protein and ubiquitin-B in Alzheimer's and Down patients

7 April 2017

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Database resources of the National Center for Biotechnology Information: update

7 April 2017

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7 April 2017

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Paradoxical homozygous expression from heterozygotes and heterozygous expression from homozygotes as a consequence of transcriptional infidelity through a polyadenine tract in the AP3B1 gene responsible for canine cyclic neutropenia.

7 April 2017

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Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli

28 September 2017

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Neuropeptide research discloses part of the secrets of Alzheimer's disease neuropathogenesis: state of the art 2004.

28 September 2017

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The ORFanage: an ORFan database

28 September 2017

1 reference

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Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli.

28 September 2017

1 reference

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Deoxyribo ucleic acid-directed synthesis of ribonucleic acid by an enzyme from Escherichia coli

28 September 2017

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Widespread selection for local RNA secondary structure in coding regions of bacterial genes

28 September 2017

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Twenty thousand ORFan microbial protein families for the biologist?

28 September 2017

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The Staphylococcus aureus Map protein is an immunomodulator that interferes with T cell-mediated responses

28 September 2017

1 reference

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Chemical modification of nucleotide bases and mRNA editing depend on hexamer or nucleoprotein phase in Sendai virus nucleocapsids

28 September 2017

1 reference

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Recoding: translational bifurcations in gene expression.

28 September 2017

1 reference

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Recovery of infectious Ebola virus from complementary DNA: RNA editing of the GP gene and viral cytotoxicity

28 September 2017

1 reference

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Molecular misreading: a new type of transcript mutation expressed during aging.

28 September 2017

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Nonlinearity in genetic decoding: homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting

28 September 2017

1 reference

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Selection against frameshift mutations limits microsatellite expansion in coding DNA

28 September 2017

1 reference

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Finding families for genomic ORFans

28 September 2017

1 reference

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The versatility of paramyxovirus RNA polymerase stuttering

28 September 2017

1 reference

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Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Compositional biases of bacterial genomes and evolutionary implications

28 September 2017

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The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing

28 September 2017

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Bacterial insertion sequences

28 September 2017

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GP mRNA of Ebola virus is edited by the Ebola virus polymerase and by T7 and vaccinia virus polymerases

28 September 2017

1 reference

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Translational frameshifting in the control of transposition in bacteria

28 September 2017

1 reference

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Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting

28 September 2017

1 reference

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Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame

28 September 2017

1 reference

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Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Reading-frame restoration with an apolipoprotein B gene frameshift mutation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Frameshifting by transcriptional slippage is involved in production of MxiE, the transcription activator regulated by the activity of the type III secretion apparatus in Shigella flexneri.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

DNA polymerase III holoenzyme from Thermus thermophilus identification, expression, purification of components, and use to reconstitute a processive replicase

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Reading-frame restoration by transcriptional slippage at long stretches of adenine residues in mammalian cells.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Complete DNA sequence of yeast chromosome XI.

28 November 2018

1 reference

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Regulation of pyrBI operon expression in Escherichia coli by UTP-sensitive reiterative RNA synthesis during transcriptional initiation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1088944

Long runs of adenines and human mutations

28 November 2018

1 reference

12 December 2020

Phenotypic variation in Haemophilus influenzae: The interrelationship of colony opacity, capsule and lipopolysaccharide

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Regulation of codBA operon expression in Escherichia coli by UTP-dependent reiterative transcription and UTP-sensitive transcriptional start site switching

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12 December 2020

Tetrameric repeat units associated with virulence factor phase variation in Haemophilus also occur in Neisseria spp. and Moraxella catarrhalis

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12 December 2020

Thermus thermophilis dnaX homolog encoding gamma- and tau-like proteins of the chromosomal replicase

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12 December 2020

Transcriptional infidelity in aging cells and its relevance for the Orgel hypothesis

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12 December 2020

Identifiers

DOI

10.1186/GB-2005-6-3-R25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15774026%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 January 2020

1034482573

0 references

OpenCitations bibliographic resource ID

4236445

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4236445

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15774026%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

PubMed publication ID

15774026

1 reference