Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming (Q24810301)

1

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Ragnhild Sneve

2

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Knut I Kristiansen

3

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Ola Snøve

4

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Thomas Grünfeld

5

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Erling Seeberg

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

7

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language of work or name

English

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publication date

2005

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published in

Nucleic Acids Research

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volume

33

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issue

10

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page(s)

3263-70

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cites work

1 reference

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RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

7 April 2017

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A survey of small RNA-encoding genes in Escherichia coli

7 April 2017

1 reference

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Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

7 April 2017

1 reference

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A computational approach to identify genes for functional RNAs in genomic sequences

7 April 2017

1 reference

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Identification of novel small RNAs using comparative genomics and microarrays

7 April 2017

1 reference

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3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

7 April 2017

1 reference

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Non–coding RNA genes and the modern RNA world

7 April 2017

1 reference

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Basic local alignment search tool

7 April 2017

1 reference

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The complete genome sequence of Escherichia coli K-12

7 April 2017

1 reference

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Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

7 April 2017

1 reference

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Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli

7 April 2017

1 reference

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A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome

7 April 2017

1 reference

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Computational identification of noncoding RNAs in E. coli by comparative genomics

7 April 2017

1 reference

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Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

7 April 2017

1 reference

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Multiple hok genes on the chromosome of Escherichia coli

7 April 2017

1 reference

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Assessing the accuracy of prediction algorithms for classification: an overview

7 April 2017

1 reference

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RNA regulation: a new genetics?

7 April 2017

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ASAP, a systematic annotation package for community analysis of genomes

28 September 2017

1 reference

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Current methods of gene prediction, their strengths and weaknesses

28 September 2017

1 reference

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An expanding universe of noncoding RNAs

28 September 2017

1 reference

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Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes

28 September 2017

1 reference

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Oversynthesis of a new Escherichia coli small RNA suppresses export toxicity of DsbA'-PhoA unfoldable periplasmic proteins

28 September 2017

1 reference

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Small RNAs in Escherichia coli.

28 September 2017

1 reference

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A comparison of siRNA efficacy predictors.

28 September 2017

1 reference

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Predicting the efficacy of short oligonucleotides in antisense and RNAi experiments with boosted genetic programming.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143698

Conservation analysis of small RNA genes in Escherichia coli.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1143698

28 November 2018

Identifiers

DOI

10.1093/NAR/GKI644

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1256708

1256708

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1 reference

1 reference