Best practices for evaluating single nucleotide variant calling methods for microbial genomics (Q26798433)

title

Best practices for evaluating single nucleotide variant calling methods for microbial genomics (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

Jeffrey T. Foster

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

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Paul Keim

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

author name string

Steven P Lund

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

Rebecca E Colman

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

Jason W Sahl

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

James M Schupp

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15 June 2020

Jayne B Morrow

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1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

Marc L Salit

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

Justin M Zook

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15 June 2020

language of work or name

English

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publication date

2015

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published in

Frontiers in Genetics

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Crossref

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

volume

6

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15 June 2020

page(s)

235

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describes a project that uses

15 June 2020

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/4493402

based on heuristic

inferred from PubMed Central ID database lookup

MUMmer

object named as

MUMmer

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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A reexamination of the nucleotide incorporation fidelity of DNA polymerases

28 September 2017

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28 September 2017

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NeSSM: a Next-generation Sequencing Simulator for Metagenomics

28 September 2017

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Short read fragment assembly of bacterial genomes

31 May 2018

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Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7.

31 May 2018

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Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks

31 May 2018

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Informed and automated k-mer size selection for genome assembly

28 November 2018

1 reference

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28 November 2018

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GenFrag 2.1: new features for more robust fragment assembly benchmarks.

28 November 2018

1 reference

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Quantitation of DNA and RNA with absorption and fluorescence spectroscopy

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26217378

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A dataset generator for whole genome shotgun sequencing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26217378

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FGENE.2015.00235

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json

15 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26217378%20AND%20SRC:MED&resulttype=core&format=json