The noncoding RNA revolution-trashing old rules to forge new ones (Q26851952)

language of work or name

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27 March 2014

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157

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PubMed

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77-94

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1

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Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII

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Evolution of the genetic apparatus

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Ribosome structure determined by electron microscopy of Escherichia coli small subunits, large subunits and monomeric ribosomes

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Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

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An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA.

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Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

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RNA splicing in neurospora mitochondria: self-splicing of a mitochondrial intron in vitro

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Multiple self-splicing introns in bacteriophage T4: evidence from autocatalytic GTP labeling of RNA in vitro.

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A self-splicing RNA excises an intron lariat

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Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro

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Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

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The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus

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The human XIST gene: analysis of a 17 kb inactive X-specific RNA that contains conserved repeats and is highly localized within the nucleus

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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

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Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans

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MicroRNAs: target recognition and regulatory functions

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The spliceosome: design principles of a dynamic RNP machine

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Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

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Long noncoding RNAs with enhancer-like function in human cells

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Small nucleolar RNAs U32a, U33, and U35a are critical mediators of metabolic stress

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Formation of the 3' end of histone mRNA: getting closer to the end

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The role of miRNAs in regulating gene expression networks

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Structural insights into the roles of water and the 2' hydroxyl of the P site tRNA in the peptidyl transferase reaction

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

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A conserved WD40 protein binds the Cajal body localization signal of scaRNP particles

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Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

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Genome-wide identification of polycomb-associated RNAs by RIP-seq

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Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants

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GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets

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Long noncoding RNAs with snoRNA ends

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Dogma derailed: the many influences of RNA on the genome

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Structural insights into eukaryotic ribosomes and the initiation of translation

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Elements of ribosomal drug resistance and specificity.

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Spinal muscular atrophy: from gene to therapy

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Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning

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7 January 2021

Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA

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Non-coding RNA in fly dosage compensation

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Atomic structures of the eukaryotic ribosome

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The spliceosome: a flexible, reversible macromolecular machine

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Genetic regulatory mechanisms in the synthesis of proteins

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Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

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RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals

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6S RNA regulates E. coli RNA polymerase activity

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Mechanical devices of the spliceosome: motors, clocks, springs, and things

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Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs

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7 January 2021

An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes

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7 January 2021

Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena

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7 January 2021

Sensing Small Molecules by Nascent RNA

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7 January 2021

A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes

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7 January 2021

Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure

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7 January 2021

Pre-mRNA splicing: the discovery of a new spliceosome doubles the challenge

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7 January 2021

Evolutionary fates and origins of U12-type introns.

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7 January 2021

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

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7 January 2021

The Sm-like Hfq protein increases OxyS RNA interaction with target mRNAs

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7 January 2021

Inhibition of P-TEFb (CDK9/Cyclin T) kinase and RNA polymerase II transcription by the coordinated actions of HEXIM1 and 7SK snRNA

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7 January 2021

Crystal structure of a hepatitis delta virus ribozyme

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7 January 2021

Are snRNPs involved in splicing?

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7 January 2021

Attenuation in the control of expression of bacterial operons

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Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

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7 January 2021

A small catalytic oligoribonucleotide

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7 January 2021

A telomeric sequence in the RNA of Tetrahymena telomerase required for telomere repeat synthesis

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7 January 2021

Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA

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7 January 2021

In vitro selection of RNA molecules that bind specific ligands

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An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells

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A ratchet-like inter-subunit reorganization of the ribosome during translocation

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Structure of the 30S ribosomal subunit

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Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

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A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome

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Efficient integration of an intron RNA into double-stranded DNA by reverse splicing

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Kinetic analysis reveals successive steps leading to miRNA-mediated silencing in mammalian cells

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A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis

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Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

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The nuclear RNase III Drosha initiates microRNA processing

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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine

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The Microprocessor complex mediates the genesis of microRNAs

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Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

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RNA-mediated epigenetic programming of a genome-rearrangement pathway

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Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

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Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch

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Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution

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Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

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7 January 2021

Expansion of the eukaryotic proteome by alternative splicing

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Widespread transcription at neuronal activity-regulated enhancers

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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

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7 January 2021

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

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7 January 2021

Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis

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7 January 2021

Circular RNAs are a large class of animal RNAs with regulatory potency

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7 January 2021

Natural RNA circles function as efficient microRNA sponges

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7 January 2021

The architecture of Tetrahymena telomerase holoenzyme

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7 January 2021

Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA

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7 January 2021

lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs.

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7 January 2021

DNMT1-interacting RNAs block gene-specific DNA methylation

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7 January 2021

RNA catalyses nuclear pre-mRNA splicing

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7 January 2021

PIWI proteins and PIWI-interacting RNAs in the soma

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7 January 2021

Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

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7 January 2021

Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells

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7 January 2021

A widespread self-cleaving ribozyme class is revealed by bioinformatics.

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7 January 2021

Argonaute proteins: key players in RNA silencing

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7 January 2021

Biogenesis of small RNAs in animals

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Diversifying microRNA sequence and function

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7 January 2021

Hfq and its constellation of RNA

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7 January 2021

Cryo-EM structure of the E. coli translating ribosome in complex with SRP and its receptor

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7 January 2021

miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs

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7 January 2021

The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC.

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7 January 2021

A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation

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7 January 2021

Promiscuous RNA binding by Polycomb repressive complex 2.

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7 January 2021

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

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7 January 2021

Yeast telomerase RNA: a flexible scaffold for protein subunits

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7 January 2021

Murine cytomegalovirus encodes a stable intron that facilitates persistent replication in the mouse

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7 January 2021

Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA.

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7 January 2021

RNA landscape of evolution for optimal exon and intron discrimination

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7 January 2021

MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

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7 January 2021

Protein-free small nuclear RNAs catalyze a two-step splicing reaction

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7 January 2021

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

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7 January 2021

Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

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7 January 2021

Adenosylcobalamin inhibits ribosome binding to btuB RNA

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7 January 2021

A riboswitch-regulated antisense RNA in Listeria monocytogenes

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7 January 2021

Studies on the composition of the protein from Escherichia coli ribosomes

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7 January 2021

How ribosomes select initiator regions in mRNA: base pair formation between the 3' terminus of 16S rRNA and the mRNA during initiation of protein synthesis in Escherichia coli

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7 January 2021

Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

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7 January 2021

Antibodies to small nuclear RNAs complexed with proteins are produced by patients with systemic lupus erythematosus

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7 January 2021

Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA

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7 January 2021

A general two-metal-ion mechanism for catalytic RNA

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7 January 2021

Double-stranded RNA induces mRNA degradation in Trypanosoma brucei

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7 January 2021

The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli

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7 January 2021

The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

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7 January 2021

Association and spreading of the Drosophila dosage compensation complex from a discrete roX1 chromatin entry site.

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7 January 2021

A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs.

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7 January 2021

Mouse U14 snRNA is encoded in an intron of the mouse cognate hsc70 heat shock gene

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7 January 2021

Thiophosphates in yeast U6 snRNA specifically affect pre-mRNA splicingin vitro

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7 January 2021

Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

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7 January 2021

Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs

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7 January 2021

OOP RNA, produced from multicopy plasmids, inhibits lambda cII gene expression through an RNase III-dependent mechanism

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7 January 2021

Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Crystal structure of the ribosome at 5.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Recognition of cognate transfer RNA by the 30S ribosomal subunit

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Identification of novel genes coding for small expressed RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

An extensive class of small RNAs in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Structures of the bacterial ribosome at 3.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

A hexanucleotide element directs microRNA nuclear import.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Control of stress-dependent cardiac growth and gene expression by a microRNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Switching from repression to activation: microRNAs can up-regulate translation

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Crystal Structure of a Self-Spliced Group II Intron

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Small CRISPR RNAs guide antiviral defense in prokaryotes

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

A human telomerase holoenzyme protein required for Cajal body localization and telomere synthesis

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Crystal Structure of the Catalytic Core of an RNA-Polymerase Ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Structures of the ribosome in intermediate states of ratcheting

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Down-regulation of a host microRNA by a Herpesvirus saimiri noncoding RNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Long noncoding RNA as modular scaffold of histone modification complexes

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Genetics. Minor splicing, disrupted.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Meiosis-specific noncoding RNA mediates robust pairing of homologous chromosomes in meiosis.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Multiplex genome engineering using CRISPR/Cas systems

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Translational repression and eIF4A2 activity are critical for microRNA-mediated gene regulation

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

RNA-guided human genome engineering via Cas9

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Unusual resistance of peptidyl transferase to protein extraction procedures

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Small RNA chaperones for ribosome biogenesis

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

A species of small antisense RNA in posttranscriptional gene silencing in plants

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Genes-in-pieces revisited.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Aminoacyl-RNA synthesis catalyzed by an RNA.

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Specificity and stoichiometry of subunit interactions in the human telomerase holoenzyme assembled in vivo

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Further Evidence That the Majority of Primary Nuclear RNA Transcripts in Mammalian Cells Do Not Contribute to mRNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Determination of Quaternary Structure by Small Angle Neutron Scattering

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

SnRNAs, SnRNPs, and RNA Processing

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Structure of ribosomal RNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Structural basis of the translational elongation cycle

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Mechanisms of alternative pre-messenger RNA splicing

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

How should we think about the ribosome?

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Viruses, microRNAs, and host interactions

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

Splicing of a rare class of introns by the U12-dependent spliceosome

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

The T box and S box transcription termination control systems

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

RNA editing in kinetoplastids

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021

RNA-programmed genome editing in human cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.CELL.2014.03.008

7 January 2021