The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. (Q37953892)

25 August 2017

title

The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. (English)

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25 August 2017

Nicholas J Watkins

1

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Markus T Bohnsack

object named as

Markus T Bohnsack

series ordinal

2

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publication date

7 November 2011

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Wiley interdisciplinary reviews. RNA

25 August 2017

published in

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25 August 2017

volume

3

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25 August 2017

issue

3

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25 August 2017

page(s)

397-414

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rRNA modifications and ribosome function

25 August 2017

cites work

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Post-transcriptional nucleotide modification and alternative folding of RNA

21 January 2018

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Nucleotide modifications in three functionally important regions of the Saccharomyces cerevisiae ribosome affect translation accuracy

21 January 2018

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Optimization of ribosome structure and function by rRNA base modification

21 January 2018

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Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping

21 January 2018

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Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center

21 January 2018

1 reference

Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing

21 January 2018

1 reference

Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit

21 January 2018

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The post-transcriptional steps of eukaryotic ribosome biogenesis

21 January 2018

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The structure and function of small nucleolar ribonucleoproteins

21 January 2018

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Modification of U6 spliceosomal RNA is guided by other small RNAs

21 January 2018

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RNA-modifying machines in archaea

21 January 2018

1 reference

Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs

21 January 2018

1 reference

Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA

21 January 2018

1 reference

The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase

21 January 2018

1 reference

Point mutations in yeast CBF5 can abolish in vivo pseudouridylation of rRNA

21 January 2018

1 reference

Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs

21 January 2018

1 reference

Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro

21 January 2018

1 reference

Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly

21 January 2018

1 reference

The small subunit processome in ribosome biogenesis—progress and prospects

21 January 2018

1 reference

Small nucleolar RNAs U32a, U33, and U35a are critical mediators of metabolic stress

21 January 2018

1 reference

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

21 January 2018

1 reference

ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs

21 January 2018

1 reference

A human snoRNA with microRNA-like functions

21 January 2018

1 reference

Analysis of human small nucleolar RNAs (snoRNA) and the development of snoRNA modulator of gene expression vectors

21 January 2018

1 reference

Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs

21 January 2018

1 reference

A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3' end

21 January 2018

1 reference

RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP

21 January 2018

1 reference

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

21 January 2018

1 reference

The box H/ACA ribonucleoprotein complex: interplay of RNA and protein structures in post-transcriptional RNA modification

21 January 2018

1 reference

Crystal structure of an H/ACA box ribonucleoprotein particle.

21 January 2018

1 reference

Structural and functional evidence of high specificity of Cbf5 for ACA trinucleotide

21 January 2018

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H/ACA small nucleolar RNA pseudouridylation pockets bind substrate RNA to form three-way junctions that position the target U for modification

21 January 2018

1 reference

Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase

21 January 2018

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Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA

21 January 2018

1 reference

Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation

21 January 2018

1 reference

The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation

21 January 2018

1 reference

In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs

21 January 2018

1 reference

Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure.

21 January 2018

1 reference

A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP

21 January 2018

1 reference

Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein

21 January 2018

1 reference

In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex

21 January 2018

1 reference

Structure and function of archaeal box C/D sRNP core proteins

21 January 2018

1 reference

A dimeric structure for archaeal box C/D small ribonucleoproteins

21 January 2018

1 reference

A novel Nop5-sRNA interaction that is required for efficient archaeal box C/D sRNP formation

21 January 2018

1 reference

Structural Basis for Substrate Placement by an Archaeal Box C/D Ribonucleoprotein Particle

21 January 2018

1 reference

Structural organization of box C/D RNA-guided RNA methyltransferase

21 January 2018

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Conserved spacing between the box C/D and C'/D' RNPs of the archaeal box C/D sRNP complex is required for efficient 2'-O-methylation of target RNAs

21 January 2018

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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

21 January 2018

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Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing

21 January 2018

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Site-specific cross-linking analyses reveal an asymmetric protein distribution for a box C/D snoRNP.

21 January 2018

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Signature amino acids enable the archaeal L7Ae box C/D RNP core protein to recognize and bind the K-loop RNA motif

21 January 2018

1 reference

Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP.

21 January 2018

1 reference

Molecular basis for RNA kink-turn recognition by the h15.5K small RNP protein

21 January 2018

1 reference

The spatial-functional coupling of box C/D and C'/D' RNPs is an evolutionarily conserved feature of the eukaryotic box C/D snoRNP nucleotide modification complex

21 January 2018

1 reference

Isolation of U3 snoRNP from CHO cells: a novel 55 kDa protein binds to the central part of U3 snoRNA

21 January 2018

1 reference

Analysis of sequence and structural features that identify the B/C motif of U3 small nucleolar RNA as the recognition site for the Snu13p-Rrp9p protein pair

21 January 2018

1 reference

The hU3-55K protein requires 15.5K binding to the box B/C motif as well as flanking RNA elements for its association with the U3 small nucleolar RNA in Vitro

21 January 2018

1 reference

Role of pre-rRNA base pairing and 80S complex formation in subnucleolar localization of the U3 snoRNP

21 January 2018

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A weak C' box renders U3 snoRNA levels dependent on hU3-55K binding

21 January 2018

1 reference

A novel small-subunit processome assembly intermediate that contains the U3 snoRNP, nucleolin, RRP5, and DBP4.

21 January 2018

1 reference

Xenopus U8 snoRNA binding protein is a conserved nuclear decapping enzyme

21 January 2018

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Xenopus LSm proteins bind U8 snoRNA via an internal evolutionarily conserved octamer sequence

21 January 2018

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Involvement of nuclear import and export factors in U8 box C/D snoRNP biogenesis

21 January 2018

1 reference

An Lsm2-Lsm7 complex in Saccharomyces cerevisiae associates with the small nucleolar RNA snR5

21 January 2018

1 reference

Eukaryotic snoRNAs: a paradigm for gene expression flexibility.

21 January 2018

1 reference

Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism.

21 January 2018

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Processing of the precursors to small nucleolar RNAs and rRNAs requires common components

21 January 2018

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Functions of the exosome in rRNA, snoRNA and snRNA synthesis

21 January 2018

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Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

21 January 2018

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Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus

21 January 2018

1 reference

Biogenesis and intranuclear trafficking of human box C/D and H/ACA RNPs

21 January 2018

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PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli

21 January 2018

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A dynamic scaffold of pre-snoRNP factors facilitates human box C/D snoRNP assembly

21 January 2018

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Assembly and maturation of the U3 snoRNP in the nucleoplasm in a large dynamic multiprotein complex

21 January 2018

1 reference

The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery

21 January 2018

1 reference

Evidence that the AAA+ proteins TIP48 and TIP49 bridge interactions between 15.5K and the related NOP56 and NOP58 proteins during box C/D snoRNP biogenesis.

21 January 2018

1 reference

AtNUFIP, an essential protein for plant development, reveals the impact of snoRNA gene organisation on the assembly of snoRNPs and rRNA methylation in Arabidopsis thaliana

21 January 2018

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Position within the host intron is critical for efficient processing of box C/D snoRNAs in mammalian cells

21 January 2018

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Biogenesis of spliceosomal small nuclear ribonucleoproteins

21 January 2018

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Distinct molecular signals for nuclear import of the nucleolar snRNA, U3.

21 January 2018

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Nuclear retention elements of U3 small nucleolar RNA

21 January 2018

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Retention and 5' cap trimethylation of U3 snRNA in the nucleus

21 January 2018

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CRM1 controls the composition of nucleoplasmic pre-snoRNA complexes to licence them for nucleolar transport

21 January 2018

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Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly

21 January 2018

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The cotranscriptional assembly of snoRNPs controls the biosynthesis of H/ACA snoRNAs in Saccharomyces cerevisiae

21 January 2018

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SHQ1 is required prior to NAF1 for assembly of H/ACA small nucleolar and telomerase RNPs

21 January 2018

1 reference

Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs.

21 January 2018

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Molecular chaperone Hsp90 stabilizes Pih1/Nop17 to maintain R2TP complex activity that regulates snoRNA accumulation

21 January 2018

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The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing

21 January 2018

1 reference

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

21 January 2018

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Functional mapping of the U3 small nucleolar RNA from the yeast Saccharomyces cerevisiae

21 January 2018

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Three small nucleolar RNAs that are involved in ribosomal RNA precursor processing

21 January 2018

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Three new small nucleolar RNAs that are psoralen cross-linked in vivo to unique regions of pre-rRNA.

21 January 2018

1 reference

U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production.

21 January 2018

1 reference

18S rRNA processing requires base pairings of snR30 H/ACA snoRNA to eukaryote-specific 18S sequences

21 January 2018

1 reference

U14 base-pairs with 18S rRNA: a novel snoRNA interaction required for rRNA processing

21 January 2018

1 reference

A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes

21 January 2018

1 reference

RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs

21 January 2018

1 reference

Strong dependence between functional domains in a dual-function snoRNA infers coupling of rRNA processing and modification events

21 January 2018

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Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte

21 January 2018

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The sequence of the 5' end of the U8 small nucleolar RNA is critical for 5.8S and 28S rRNA maturation

21 January 2018

1 reference

Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences

21 January 2018

1 reference

Processing of mammalian rRNA precursors at the 3' end of 18S rRNA. Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA.

21 January 2018

1 reference

The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3'-terminal loop of 18 S rRNA is essential in yeast

21 January 2018

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Yeast pre-rRNA processing and modification occur cotranscriptionally

21 January 2018

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The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

21 January 2018

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Small RNAs derived from snoRNAs

21 January 2018

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Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

21 January 2018

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Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs

21 January 2018

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Identification of human miRNA precursors that resemble box C/D snoRNAs

21 January 2018

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The mechanism of ATP-dependent RNA unwinding by DEAD box proteins

21 January 2018

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RNA helicases at work: binding and rearranging

21 January 2018

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Quantitative analysis of snoRNA association with pre-ribosomes and release of snR30 by Rok1 helicase

21 January 2018

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The Putative RNA Helicase Dbp4p Is Required for Release of the U14 snoRNA from Preribosomes in Saccharomyces cerevisiae

21 January 2018

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The helicase Has1p is required for snoRNA release from pre-rRNA.

21 January 2018

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The splicing ATPase prp43p is a component of multiple preribosomal particles

21 January 2018

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Prp43p is a DEAH-box spliceosome disassembly factor essential for ribosome biogenesis

21 January 2018

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The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis

21 January 2018

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Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis

21 January 2018

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RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1.

21 January 2018

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Prp43: An RNA helicase-like factor involved in spliceosome disassembly

21 January 2018

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Prp43p contains a processive helicase structural architecture with a specific regulatory domain

21 January 2018

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Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA.

21 January 2018

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Yeast 18S rRNA dimethylase Dim1p: a quality control mechanism in ribosome synthesis?

21 January 2018

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The yeast ribosome synthesis factor Emg1 is a novel member of the superfamily of alpha/beta knot fold methyltransferases

21 January 2018

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Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits

21 January 2018

1 reference

Functional redundancy of Spb1p and a snR52-dependent mechanism for the 2'-O-ribose methylation of a conserved rRNA position in yeast.

21 January 2018

1 reference

Genetic evidence for 18S rRNA binding and an Rps19p assembly function of yeast nucleolar protein Nep1p

21 January 2018

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Spb1p-directed formation of Gm2922 in the ribosome catalytic center occurs at a late processing stage

21 January 2018

1 reference

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

21 January 2018

1 reference

Structural basis for site-specific ribose methylation by box C/D RNA protein complexes

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/WRNA.117

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25 August 2017

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