Mechanisms Underlying the Selection and Function of Macrophage-Specific Enhancers (Q27006789)

David Gosselin

series ordinal

2

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language of work or name

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2015

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Cold Spring Harbor Symposia on Quantitative Biology

published in

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volume

80

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page(s)

213-21

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An integrated encyclopedia of DNA elements in the human genome

cites work

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Identification of a retinoic acid responsive element in the retinoic acid receptor beta gene

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The selection and function of cell type-specific enhancers

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

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Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

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Identification of a unique TGF-β-dependent molecular and functional signature in microglia

21 March 2017

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Genetic and epigenetic fine mapping of causal autoimmune disease variants

21 March 2017

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Super-enhancers in the control of cell identity and disease

21 March 2017

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Genetics of rheumatoid arthritis contributes to biology and drug discovery

21 March 2017

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Mapping and analysis of chromatin state dynamics in nine human cell types

7 April 2017

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Genome-wide mapping of in vivo protein-DNA interactions

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Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

7 April 2017

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

7 April 2017

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Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages

7 April 2017

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Systematic localization of common disease-associated variation in regulatory DNA

7 April 2017

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The long-range interaction landscape of gene promoters

7 April 2017

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A lineage of myeloid cells independent of Myb and hematopoietic stem cells

7 April 2017

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Fate mapping analysis reveals that adult microglia derive from primitive macrophages

7 April 2017

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Development of monocytes, macrophages, and dendritic cells

7 April 2017

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Common regulatory variation impacts gene expression in a cell type-dependent manner

7 April 2017

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Genetic Variation Determines PPARγ Function and Anti-diabetic Drug Response In Vivo.

7 April 2017

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Genetic basis of autoimmunity

28 September 2017

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Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice

28 September 2017

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Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Environment drives selection and function of enhancers controlling tissue-specific macrophage identities

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Principles of regulatory information conservation between mouse and human

28 September 2017

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Transcription factor cooperativity in early adipogenic hotspots and super-enhancers.

28 September 2017

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Monocytes and macrophages: developmental pathways and tissue homeostasis

28 September 2017

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Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers.

28 September 2017

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Tissue-specific signals control reversible program of localization and functional polarization of macrophages

28 September 2017

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Anti-diabetic rosiglitazone remodels the adipocyte transcriptome by redistributing transcription to PPARγ-driven enhancers

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes

28 September 2017

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A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

28 September 2017

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Embryonic and adult-derived resident cardiac macrophages are maintained through distinct mechanisms at steady state and during inflammation

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Effect of natural genetic variation on enhancer selection and function.

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Alveolar macrophages develop from fetal monocytes that differentiate into long-lived cells in the first week of life via GM-CSF.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development

28 September 2017

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Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

28 September 2017

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CD33 Alzheimer's disease locus: altered monocyte function and amyloid biology

28 September 2017

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Modification of enhancer chromatin: what, how, and why?

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Linking disease associations with regulatory information in the human genome

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Adult Langerhans cells derive predominantly from embryonic fetal liver monocytes with a minor contribution of yolk sac-derived macrophages

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4936825

Integrating autoimmune risk loci with gene-expression data identifies specific pathogenic immune cell subsets

28 September 2017

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A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

28 September 2017

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9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

28 September 2017

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Microglia shape adult hippocampal neurogenesis through apoptosis-coupled phagocytosis

28 September 2017

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The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer

28 September 2017

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Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells

28 September 2017

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What are DNA sequence motifs?

28 September 2017

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The initiation of liver development is dependent on Foxa transcription factors

28 September 2017

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A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos

28 September 2017

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PU.1 regulates both cytokine-dependent proliferation and differentiation of granulocyte/macrophage progenitors

28 September 2017

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Conserved enhancer elements in human and mouse renin genes have different transcriptional effects in As4.1 cells

28 September 2017

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Targeted disruption of the PU.1 gene results in multiple hematopoietic abnormalities

28 September 2017

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A nuclear hormone receptor corepressor mediates transcriptional silencing by receptors with distinct repression domains.

28 September 2017

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Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

28 September 2017

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Bcl-6 and NF-kappaB cistromes mediate opposing regulation of the innate immune response.

28 September 2017

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Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.

28 September 2017

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Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

21 January 2018

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An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array.

21 January 2018

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Latent enhancers activated by stimulation in differentiated cells

21 January 2018

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GATA transcription factors as potentiators of gut endoderm differentiation.

21 January 2018

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Endogenous transforming growth factor beta 1 suppresses inflammation and promotes survival in adult CNS

28 November 2018

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