Regulation by small RNAs in bacteria: expanding frontiers (Q27009044)

Crossref

language of work or name

1 reference

16 September 2011

1 reference

1 reference

43

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PubMed

issue

6

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PubMed

page(s)

880-91

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The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli

PubMed

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The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript

21 March 2017

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A small RNA promotes siderophore production through transcriptional and metabolic remodeling

21 March 2017

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CrfA, a small noncoding RNA regulator of adaptation to carbon starvation in Caulobacter crescentus

21 March 2017

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A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule

21 March 2017

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Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

21 March 2017

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Adaptive evolution of an sRNA that controls Myxococcus development

21 March 2017

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Recognition and discrimination of target mRNAs by Sib RNAs, a cis-encoded sRNA family

21 March 2017

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Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

21 March 2017

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Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

21 March 2017

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MicA sRNA links the PhoP regulon to cell envelope stress

21 March 2017

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Genome evolution and adaptation in a long-term experiment with Escherichia coli

21 March 2017

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A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

21 March 2017

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Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection

21 March 2017

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Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

21 March 2017

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Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

21 March 2017

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Regulatory RNAs in bacteria

21 March 2017

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MicroRNAs: target recognition and regulatory functions

21 March 2017

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The 5' end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator

21 March 2017

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Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

21 March 2017

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The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

21 March 2017

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RNase E-dependent processing stabilizes MicX, a Vibrio cholerae sRNA

21 March 2017

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SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

21 March 2017

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Translational control and target recognition by Escherichia coli small RNAs in vivo

21 March 2017

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Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB.

21 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression

21 March 2017

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Implication of membrane localization of target mRNA in the action of a small RNA: mechanism of post-transcriptional regulation of glucose transporter in Escherichia coli

21 March 2017

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

21 March 2017

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Structural basis for RNA 3'-end recognition by Hfq

21 March 2017

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Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

21 March 2017

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Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon

21 March 2017

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Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA

21 March 2017

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Recognition of heptameric seed sequence underlies multi-target regulation by RybB small RNA in Salmonella enterica

21 March 2017

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Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

21 March 2017

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Regulatory RNA in bacterial pathogens

21 March 2017

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A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA

21 March 2017

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The primary transcriptome of the major human pathogen Helicobacter pylori

21 March 2017

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Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

21 March 2017

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Switching off small RNA regulation with trap-mRNA

21 March 2017

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Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

21 March 2017

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Small RNA binding to 5' mRNA coding region inhibits translational initiation

21 March 2017

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Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region

21 March 2017

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Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis

21 March 2017

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Quantitative characteristics of gene regulation by small RNA

21 March 2017

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CsrB sRNA family: sequestration of RNA-binding regulatory proteins

21 March 2017

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Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding

21 March 2017

1 reference

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Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

21 March 2017

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Effect of RyhB small RNA on global iron use in Escherichia coli

21 March 2017

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Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

21 March 2017

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Hfq and its constellation of RNA

21 March 2017

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RNA processing and its regulation: global insights into biological networks

7 April 2017

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Dual-function RNA regulators in bacteria

7 April 2017

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PolyU tail of rho-independent terminator of bacterial small RNAs is essential for Hfq action

28 September 2017

1 reference

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Properties of the Regulatory RNA-Binding Protein HuR and its Role in Controlling miRNA Repression

28 September 2017

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cis-antisense RNA, another level of gene regulation in bacteria.

28 September 2017

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Small RNAs as regulators of primary and secondary metabolism in Pseudomonas species

28 September 2017

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Role of polynucleotide phosphorylase in sRNA function in Escherichia coli

28 September 2017

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Rapid binding and release of Hfq from ternary complexes during RNA annealing

28 September 2017

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Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing

28 September 2017

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A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq.

28 September 2017

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AphA and LuxR/HapR reciprocally control quorum sensing in vibrios

28 September 2017

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RETRACTED: The second RNA chaperone, Hfq2, is also required for survival under stress and full virulence of Burkholderia cenocepacia J2315.

28 September 2017

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An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803.

28 September 2017

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Disruption of small RNA signaling caused by competition for Hfq.

28 September 2017

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Phenotypic landscape of a bacterial cell

28 September 2017

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RNase III participates in GadY-dependent cleavage of the gadX-gadW mRNA.

28 September 2017

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Rho-dependent termination of ssrS (6S RNA) transcription in Escherichia coli: implication for 3' processing of 6S RNA and expression of downstream ygfA (putative 5-formyl-tetrahydrofolate cyclo-ligase).

28 September 2017

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Studying bacterial transcriptomes using RNA-seq

28 September 2017

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Emerging complexity of microRNA generation cascades.

28 September 2017

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6S RNA regulation of relA alters ppGpp levels in early stationary phase

28 September 2017

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Identification and function of the RNA chaperone Hfq in the Lyme disease spirochete Borrelia burgdorferi.

28 September 2017

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Bacterial antisense RNAs: how many are there, and what are they doing?

28 September 2017

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Base pairing small RNAs and their roles in global regulatory networks

28 September 2017

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Stabilization of Clostridium perfringens collagenase mRNA by VR-RNA-dependent cleavage in 5' leader sequence

28 September 2017

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Positive regulation by small RNAs and the role of Hfq

28 September 2017

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Legionella pneumophila 6S RNA optimizes intracellular multiplication

28 September 2017

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Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery

28 September 2017

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Small RNA-mediated regulation at the level of transcript stability

28 September 2017

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Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa

28 September 2017

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Computational prediction of sRNAs and their targets in bacteria.

28 September 2017

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A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

28 September 2017

1 reference

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Activation of gene expression by small RNA.

28 September 2017

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The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation

28 September 2017

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Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica

28 September 2017

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Experimental approaches for the discovery and characterization of regulatory small RNA.

28 September 2017

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6S RNA binding to Esigma(70) requires a positively charged surface of sigma(70) region 4.2.

28 September 2017

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The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior

28 September 2017

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Small RNAs establish gene expression thresholds

28 September 2017

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Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70.

28 September 2017

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6S RNA: a regulator of transcription

28 September 2017

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Regulatory mechanisms employed by cis-encoded antisense RNAs

28 September 2017

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28 September 2017

RNA synthetic biology

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6S RNA - an ancient regulator of bacterial RNA polymerase rediscovered

28 September 2017

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Antisense RNAs in bacteria and their genetic elements

28 September 2017

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Small RNAs in Escherichia coli.

28 September 2017

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Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage

28 September 2017

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Accessibility and evolutionary conservation mark bacterial small-rna target-binding regions

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

RNAs actively cycle on the Sm-like protein Hfq.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

ProQ is an RNA chaperone that controls ProP levels in Escherichia coli

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Hfq binding at RhlB-recognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Redefining microRNA targets

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Down-regulation of outer membrane proteins by noncoding RNAs: unraveling the cAMP-CRP- and sigmaE-dependent CyaR-ompX regulatory case.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

Indole signalling contributes to the stable maintenance of Escherichia coli multicopy plasmids.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3176440

10.1016/J.MOLCEL.2011.08.022

28 November 2018

Identifiers

DOI

1 reference

release_egfmxbkt65ekbg35ab6x6efi7q

176347

Fatcat ID

0 references

176347

1 reference

1 reference

1 reference