Targeted RNA-sequencing with competitive multiplex-PCR amplicon libraries (Q27302929)

2

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Jennie L Lovett

3

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Jiyoun Yeo

4

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Lauren M Stanoszek

5

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Albert Levin

6

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Jia Li

7

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Mei Lu

8

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Leming Shi

9

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Kenneth Muldrew

10

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James C Willey

Creative Commons Attribution 4.0 International

11

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language of work or name

English

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publication date

2013

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published in

PLOS One

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volume

8

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issue

11

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page(s)

e79120

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copyright license

start time

13 November 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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RNA-Seq: a revolutionary tool for transcriptomics

21 March 2017

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 March 2017

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Statistical methods for assessing agreement between two methods of clinical measurement

21 March 2017

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Protocol dependence of sequencing-based gene expression measurements

21 March 2017

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Primer3--new capabilities and interfaces

21 March 2017

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Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

7 April 2017

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Exome RNA sequencing reveals rare and novel alternative transcripts

7 April 2017

1 reference

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Targeted RNA sequencing reveals the deep complexity of the human transcriptome

28 September 2017

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Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

28 September 2017

1 reference

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Microarray generation of thousand-member oligonucleotide libraries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Differential expression in RNA-seq: a matter of depth

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Synthetic spike-in standards for RNA-seq experiments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Reproducibility and quantitation of amplicon sequencing-based detection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process

28 September 2017

1 reference

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Target-enrichment strategies for next-generation sequencing

28 September 2017

1 reference

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Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

28 September 2017

1 reference

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Methods for genomic partitioning

28 September 2017

1 reference

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Differential susceptibility of PCR reactions to inhibitors: an important and unrecognised phenomenon

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Development of a single tube 640-plex genotyping method for detection of nucleic acid variations on microarrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

GENOMEMASKER package for designing unique genomic PCR primers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Practical considerations in design of internal amplification controls for diagnostic PCR assays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Reproducible gene expression measurement among multiple laboratories obtained in a blinded study using standardized RT (StaRT)-PCR.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Rapid and simple PCR assay for quantitation of human immunodeficiency virus type 1 RNA in plasma: application to acute retroviral infection.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Kinetic PCR Analysis: Real-time Monitoring of DNA Amplification Reactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Quantitation of mRNA by the polymerase chain reaction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Analysis of cytokine mRNA and DNA: detection and quantitation by competitive polymerase chain reaction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3827295

Evaluation of DNA microarray results with quantitative gene expression platforms

28 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0079120

Multiplex standardized RT-PCR for expression analysis of many genes in small samples

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24236095

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0079120

1 reference

ADS bibcode

2013PLoSO...879120B

0 references

1 reference

1 reference

PubMed publication ID

24236095

1 reference