Structural dynamics as a contributor to error-prone replication by an RNA-dependent RNA polymerase. (Q27313945)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25378410%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Structural dynamics as a contributor to error-prone replication by an RNA-dependent RNA polymerase (English)

1 reference

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22 February 2020

0 references

6

1 reference

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22 February 2020

david filman

9

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22 February 2020

James M Hogle

12

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22 February 2020

author name string

Ibrahim M Moustafa

1

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22 February 2020

Victoria K Korboukh

2

1 reference

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22 February 2020

Jamie J Arnold

3

1 reference

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22 February 2020

Eric D Smidansky

4

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22 February 2020

Laura L Marcotte

5

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22 February 2020

Xiaorong Yang

7

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22 February 2020

María Antonieta Sánchez-Farrán

8

1 reference

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22 February 2020

Janna K Maranas

10

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22 February 2020

David D Boehr

11

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22 February 2020

Coray M Colina

13

1 reference

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22 February 2020

Craig E Cameron

14

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22 February 2020

language of work or name

English

0 references

publication date

6 November 2014

1 reference

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Journal of Biological Chemistry

22 February 2020

published in

1 reference

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22 February 2020

volume

289

1 reference

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22 February 2020

issue

52

1 reference

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22 February 2020

page(s)

36229-36248

1 reference

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Distinct Conformations of a Putative Translocation Element in Poliovirus Polymerase

22 February 2020

cites work

1 reference

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Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase

21 March 2017

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Intrinsic motions along an enzymatic reaction trajectory

21 March 2017

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Crystal Structure of Poliovirus 3CD Protein: Virally Encoded Protease and Precursor to the RNA-Dependent RNA Polymerase

21 March 2017

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21 March 2017

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Features and development of Coot

21 March 2017

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

21 March 2017

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21 March 2017

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21 March 2017

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Coot: model-building tools for molecular graphics

21 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

21 March 2017

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21 March 2017

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Coronaviruses lacking exoribonuclease activity are susceptible to lethal mutagenesis: evidence for proofreading and potential therapeutics

21 March 2017

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Development of Multiscale Models for Complex Chemical Systems: From H+H2to Biomolecules (Nobel Lecture)

21 March 2017

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A hierarchy of timescales in protein dynamics is linked to enzyme catalysis

7 April 2017

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Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

7 April 2017

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Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

7 April 2017

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Essential dynamics of proteins

7 April 2017

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Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms

7 April 2017

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PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

28 September 2017

1 reference

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RNA virus population diversity, an optimum for maximal fitness and virulence

28 September 2017

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Coronaviruses as DNA wannabes: a new model for the regulation of RNA virus replication fidelity

28 September 2017

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Vaccine-derived mutation in motif D of poliovirus RNA-dependent RNA polymerase lowers nucleotide incorporation fidelity

28 September 2017

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Role of motif B loop in allosteric regulation of RNA-dependent RNA polymerization activity

28 September 2017

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What is the role of motif D in the nucleotide incorporation catalyzed by the RNA-dependent RNA polymerase from poliovirus?

28 September 2017

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A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease

28 September 2017

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A Polymerase mechanism-based strategy for viral attenuation and vaccine development

28 September 2017

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Coxsackievirus B3 mutator strains are attenuated in vivo

28 September 2017

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Motif D of viral RNA-dependent RNA polymerases determines efficiency and fidelity of nucleotide addition

28 September 2017

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Molecular dynamics simulations of viral RNA polymerases link conserved and correlated motions of functional elements to fidelity

28 September 2017

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Human mitochondrial RNA polymerase: evaluation of the single-nucleotide-addition cycle on synthetic RNA/DNA scaffolds

28 September 2017

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Protein dynamics and allostery: an NMR view

28 September 2017

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Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing

28 September 2017

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Nucleotide-dependent conformational change governs specificity and analog discrimination by HIV reverse transcriptase

28 September 2017

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28 September 2017

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Dynamics: the missing link between structure and function of the viral RNA-dependent RNA polymerase?

28 September 2017

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28 September 2017

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Foot-and-mouth disease virus mutant with decreased sensitivity to ribavirin: implications for error catastrophe

28 September 2017

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28 September 2017

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Remote site control of an active site fidelity checkpoint in a viral RNA-dependent RNA polymerase

28 September 2017

1 reference

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Ribavirin and lethal mutagenesis of poliovirus: molecular mechanisms, resistance and biological implications

28 September 2017

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28 September 2017

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Poliovirus RNA-dependent RNA polymerase (3Dpol): kinetic, thermodynamic, and structural analysis of ribonucleotide selection

28 September 2017

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28 September 2017

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Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mg2+.

28 September 2017

1 reference

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A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity

28 September 2017

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Long-Range Interaction Networks in the Function and Fidelity of Poliovirus RNA-Dependent RNA Polymerase Studied by Nuclear Magnetic Resonance

28 September 2017

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31 May 2018

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Determinants of RNA-dependent RNA polymerase (in)fidelity revealed by kinetic analysis of the polymerase encoded by a foot-and-mouth disease virus mutant with reduced sensitivity to ribavirin

31 May 2018

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Theory of lethal mutagenesis for viruses

31 May 2018

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Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

31 May 2018

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Engineering attenuated virus vaccines by controlling replication fidelity

31 May 2018

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Exploring the dynamics of four RNA-dependent RNA polymerases by a coarse-grained model

21 January 2018

1 reference

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Production of "authentic" poliovirus RNA-dependent RNA polymerase (3D(pol)) by ubiquitin-protease-mediated cleavage in Escherichia coli.

21 January 2018

1 reference

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

21 January 2018

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

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Comparison of simple potential functions for simulating liquid water

21 January 2018

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Individual Comparisons by Ranking Methods

21 January 2018

1 reference

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Use of viscogens, dNTPalphaS, and rhodium(III) as probes in stopped-flow experiments to obtain new evidence for the mechanism of catalysis by DNA polymerase beta.

21 January 2018

1 reference

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The broad-spectrum antiviral ribonucleoside ribavirin is an RNA virus mutagen

21 January 2018

1 reference

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Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

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Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

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Large-amplitude nonlinear motions in proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25378410

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Processing of X-ray diffraction data collected in oscillation mode

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25378410

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M114.616193

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25378410%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25378410%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

25378410

1 reference