Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica (Q27324506)

39

0 references

Berend Snel

29

Berend Snel

0 references

Stephan Wawra

Stephan Wawra

35

0 references

Sucheta Tripathy

Sucheta Tripathy

32

0 references

Irene de Bruijn

Irene de Bruijn

2

0 references

Michael F. Seidl

Michael F Seidl

28

0 references

Guido Van den Ackerveken

Guido van den Ackerveken

7

0 references

Pieter van West

Pieter van West

41

0 references

Francine Govers

Francine Govers

14

0 references

Stan Oome

22

Stan Oome

0 references

Neil Horner

Neil R Horner

16

0 references

Bernard Dumas

Bernard Dumas

11

0 references

Marcia Saraiva

Marcia Saraiva

26

0 references

Julio C Vega-Arreguín

Julio C Vega-Arreguin

34

0 references

Paul F Morris

Paul Morris

20

0 references

Vincent Bulone

9

Vincent Bulone

0 references

Laura Grenville-Briggs

15

Laura J Grenville-Briggs

0 references

Elodie Gaulin

13

Elodie Gaulin

0 references

Harold Meijer

19

Harold J G Meijer

0 references

Brett M Tyler

40

Brett M Tyler

0 references

author name string

Rays H Y Jiang

1

0 references

Brian J Haas

3

0 references

Rodrigo Belmonte

4

0 references

Lars Löbach

5

0 references

James Christie

6

0 references

Arnaud Bottin

8

0 references

Sara M Díaz-Moreno

10

0 references

Lin Fan

12

0 references

Joshua Z Levin

17

0 references

Marco Mammella

18

0 references

Stan Oome

22

0 references

Andrew J Phillips

23

0 references

David van Rooyen

24

0 references

Elzbieta Rzeszutek

25

0 references

Chris J Secombes

27

0 references

Joost H M Stassen

30

0 references

Sean Sykes

31

0 references

Herbert van den Berg

33

0 references

Sarah K Young

36

0 references

Qiandong Zeng

37

0 references

Javier Dieguez-Uribeondo

Creative Commons Attribution 4.0 International

38

0 references

language of work or name

English

0 references

publication date

June 2013

0 references

published in

PLOS Genetics

0 references

volume

9

0 references

page(s)

e1003272

0 references

issue

6

0 references

copyright license

start time

13 June 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

21 March 2017

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

21 March 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

21 March 2017

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

21 March 2017

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Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

21 March 2017

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Expressed sequence tags from the oomycete fish pathogen Saprolegnia parasitica reveal putative virulence factors

21 March 2017

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 March 2017

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 March 2017

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The KEGG resource for deciphering the genome

21 March 2017

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21 March 2017

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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

21 March 2017

1 reference

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Mechanisms and evolution of virulence in oomycetes

7 April 2017

1 reference

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Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Genome evolution in filamentous plant pathogens: why bigger can be better

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Emergence of the sudden oak death pathogen Phytophthora ramorum

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Diversified carbohydrate-binding lectins from marine resources

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Digital gene expression profiling of the Phytophthora sojae transcriptome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Genomes of obligate plant pathogens reveal adaptations for obligate parasitism

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The evolutionary phylogeny of the oomycete "fungi".

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Chitin synthases from Saprolegnia are involved in tip growth and represent a potential target for anti-oomycete drugs.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Ancient class of translocated oomycete effectors targets the host nucleus.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Comprehensive comparative analysis of strand-specific RNA sequencing methods

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Studying plant-pathogen interactions in the genomics era: beyond molecular Koch's postulates to systems biology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The putative RxLR effector protein SpHtp1 from the fish pathogenic oomycete Saprolegnia parasitica is translocated into fish cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Gene expression in germinated cysts of Phytophthora nicotianae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Phytophthora sojae: root rot pathogen of soybean and model oomycete

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Sterol biosynthesis in oomycete pathogens

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Ten things to know about oomycete effectors.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Multiple horizontal gene transfer events and domain fusions have created novel regulatory and metabolic networks in the oomycete genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Cell wall chitosaccharides are essential components and exposed patterns of the phytopathogenic oomycete Aphanomyces euteiches

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Transcriptome of Aphanomyces euteiches: new oomycete putative pathogenicity factors and metabolic pathways

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

New insights into animal pathogenic oomycetes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The necessary junk: new functions for transposable elements

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

A catalogue of the effector secretome of plant pathogenic oomycetes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Genetic and physical mapping of Avr1a in Phytophthora sojae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

High frequency mitotic gene conversion in genetic hybrids of the oomycete Phytophthora sojae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The Diversity of Eukaryotes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Cell Wall Chemistry, Morphogenesis, and Taxonomy of Fungi

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Amino acid sequence and molecular characterization of a D-galactoside-specific lectin purified from sea urchin (Anthocidaris crassispina) eggs

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Analyses of extracellular carbohydrates in oomycetes unveil the existence of three different cell wall types.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Hemolysin E (HlyE, ClyA, SheA) and related toxins

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Expressed sequence tags reveal genetic diversity and putative virulence factors of the pathogenic oomycete Pythium insidiosum.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Genome evolution following host jumps in the Irish potato famine pathogen lineage.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Sterol metabolism in the oomycete Aphanomyces euteiches, a legume root pathogen

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Evolution of Ultrasmall Spliceosomal Introns in Highly Reduced Nuclear Genomes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Phylogenetic relationships among plant and animal parasites, and saprotrophs in Aphanomyces (Oomycetes).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Characterisation of an extracellular vibriolysin of the fish pathogen Moritella viscosa.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

RXLR-mediated entry of Phytophthora sojae effector Avr1b into soybean cells does not require pathogen-encoded machinery

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

A translocation signal for delivery of oomycete effector proteins into host plant cells.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Cellulose binding domains of a Phytophthora cell wall protein are novel pathogen-associated molecular patterns.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Ancient origin of elicitin gene clusters in Phytophthora genomes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Morphological and physiological characteristics of Saprolegnia spp. strains pathogenic to Atlantic salmon, Salmo salar L.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

A proteomics study of in vitro cyst germination and appressoria formation in Phytophthora infestans.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Differences in intensity and specificity of hypersensitive response induction in Nicotiana spp. by INF1, INF2A, and INF2B of Phytophthora infestans.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Established eurythermic line of fish cells in vitro.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

Developmental expression of D-galactoside-binding lectin in sea urchin (Anthocidaris crassispina) eggs.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3681718

The CBEL glycoprotein of Phytophthora parasitica var-nicotianae is involved in cell wall deposition and adhesion to cellulosic substrates

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23785293

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003272

1 reference

2604464

2604464

1 reference

1 reference

1 reference