Genome evolution in filamentous plant pathogens: why bigger can be better (Q34273327)

1 August 2017

Genome evolution in filamentous plant pathogens: why bigger can be better (English)

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1 August 2017

2

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1 August 2017

Sylvain Raffaele

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language of work or name

English

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publication date

8 May 2012

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Nature Reviews Microbiology

1 August 2017

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1 August 2017

10

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1 August 2017

6

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1 August 2017

417-430

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https://scigraph.springernature.com/pub.10.1038/nrmicro2790

1 August 2017

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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

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Analysis of the Rickettsia africae genome reveals that virulence acquisition in Rickettsia species may be explained by genome reduction

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Extreme genome reduction in symbiotic bacteria

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The origins of genome complexity

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Plants compared to animals: the broadest comparative study of development

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The genome sequence of the rice blast fungus Magnaporthe grisea

31 March 2020

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The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

31 March 2020

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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

31 March 2020

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Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

31 March 2020

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Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

31 March 2020

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Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

31 March 2020

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Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

31 March 2020

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Genome evolution following host jumps in the Irish potato famine pathogen lineage.

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Obligate biotrophy features unraveled by the genomic analysis of rust fungi

31 March 2020

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Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust

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Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome

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Genome sequencing and analysis of Aspergillus oryzae

31 March 2020

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The genome sequence of the filamentous fungus Neurospora crassa

31 March 2020

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Genome sequence of the model mushroom Schizophyllum commune

31 March 2020

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The Phaeodactylum genome reveals the evolutionary history of diatom genomes

31 March 2020

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Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

31 March 2020

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Gene gain and loss during evolution of obligate parasitism in the white rust pathogen of Arabidopsis thaliana

31 March 2020

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Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea

31 March 2020

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Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

31 March 2020

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Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice.

31 March 2020

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The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

31 March 2020

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DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex

31 March 2020

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The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion

31 March 2020

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Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis

31 March 2020

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Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

31 March 2020

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A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres.

31 March 2020

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Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene families

31 March 2020

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A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

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Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi

31 March 2020

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De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes

31 March 2020

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Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

31 March 2020

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Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis

31 March 2020

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Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

31 March 2020

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The accessory genome as a cradle for adaptive evolution in pathogens

31 March 2020

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Bacterial genomes: evolution of pathogenicity

31 March 2020

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Phytoplasma PMU1 exists as linear chromosomal and circular extrachromosomal elements and has enhanced expression in insect vectors compared with plant hosts.

31 March 2020

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Secondary metabolic gene clusters: evolutionary toolkits for chemical innovation

31 March 2020

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Secondary metabolism in fungi: does chromosomal location matter?

31 March 2020

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Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans

31 March 2020

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Nonneutral GC3 and retroelement codon mimicry in Phytophthora.

31 March 2020

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The evolution of isochores

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A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta

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Genetics of avirulence genes in Blumeria graminis f.sp. hordei and physical mapping of AVR(a22) and AVR(a12)

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Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species

31 March 2020

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Telomere structure and function in trypanosomes: a proposal

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Frequent ectopic recombination of virulence factor genes in telomeric chromosome clusters of P. falciparum.

31 March 2020

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Horizontal chromosome transfer, a mechanism for the evolution and differentiation of a plant-pathogenic fungus

31 March 2020

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Meiosis drives extraordinary genome plasticity in the haploid fungal plant pathogen Mycosphaerella graminicola

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Genes determining pathogenicity to pea are clustered on a supernumerary chromosome in the fungal plant pathogen Nectria haematococca

31 March 2020

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Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola

31 March 2020

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Mutation rate variation in multicellular eukaryotes: causes and consequences

31 March 2020

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Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes.

31 March 2020

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Structures of Phytophthora RXLR Effector Proteins: A CONSERVED BUT ADAPTABLE FOLD UNDERPINS FUNCTIONAL DIVERSITY

31 March 2020

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Phosphatidylinositol monophosphate-binding interface in the oomycete RXLR effector AVR3a is required for its stability in host cells to modulate plant immunity

31 March 2020

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Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces

31 March 2020

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Rearrangement of duplicated DNA in specialized cells of Neurospora

31 March 2020

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Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes

31 March 2020

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The genomic organization of plant pathogenicity in Fusarium species.

31 March 2020

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Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants

31 March 2020

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Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi

31 March 2020

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Finding a match: how do homologous sequences get together for recombination?

31 March 2020

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A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

31 March 2020

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EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora

31 March 2020

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Ancient class of translocated oomycete effectors targets the host nucleus.

31 March 2020

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Origins, evolution, and phenotypic impact of new genes.

31 March 2020

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Transposable elements and the evolution of regulatory networks

31 March 2020

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The struggle for life of the genome's selfish architects

31 March 2020

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RNA-based gene duplication: mechanistic and evolutionary insights

31 March 2020

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The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae

31 March 2020

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Transposable elements and the epigenetic regulation of the genome

31 March 2020

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Genomic imprinting: the emergence of an epigenetic paradigm.

31 March 2020

1 reference

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Internuclear Gene Silencing in Phytophthora infestans

31 March 2020

1 reference

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Internuclear gene silencing in Phytophthora infestans is established through chromatin remodelling.

31 March 2020

1 reference

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Transgene-induced silencing of the zoosporogenesis-specific NIFC gene cluster of Phytophthora infestans involves chromatin alterations

31 March 2020

1 reference

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Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans.

31 March 2020

1 reference

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Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

31 March 2020

1 reference

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Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element

31 March 2020

1 reference

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Bacterial evolution by genomic island transfer occurs via DNA transformation in planta

31 March 2020

1 reference

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Horizontal gene and chromosome transfer in plant pathogenic fungi affecting host range.

31 March 2020

1 reference

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Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms.

31 March 2020

1 reference

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A reciprocal translocation and possible insertion(s) tightly associated with host-specific virulence in Cochliobolus heterostrophus

31 March 2020

1 reference

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Evidence of Genetic Exchange by Parasexual Recombination and Genetic Analysis of Pathogenicity and Mating Type of Parasexual Recombinants in Rice Blast Fungus, Magnaporthe oryzae

31 March 2020

1 reference

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Genome structure impacts molecular evolution at the AvrLm1 avirulence locus of the plant pathogen Leptosphaeria maculans.

31 March 2020

1 reference

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Repeat-induced point mutation (RIP) as an alternative mechanism of evolution toward virulence in Leptosphaeria maculans.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae

31 March 2020

1 reference

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Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Instability of the Magnaporthe oryzae avirulence gene AVR-Pita alters virulence

31 March 2020

1 reference

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Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Recognition ofPhytophthora infestansAvr4 by potato R4 is triggered by C-terminal domains comprising W motifs

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Copy number variation and transcriptional polymorphisms of Phytophthora sojae RXLR effector genes Avr1a and Avr3a

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

The Phytophthora sojae avirulence locus Avr3c encodes a multi-copy RXLR effector with sequence polymorphisms among pathogen strains

31 March 2020

1 reference

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Understanding and exploiting late blight resistance in the age of effectors.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Sequence variants of the Phytophthora sojae RXLR effector Avr3a/5 are differentially recognized by Rps3a and Rps5 in soybean

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Natural Disulfide Bond-disrupted Mutants of AVR4 of the Tomato Pathogen Cladosporium fulvum Are Sensitive to Proteolysis, Circumvent Cf-4-mediated Resistance, but Retain Their Chitin Binding Ability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Host resistance to a fungal tomato pathogen lost by a single base-pair change in an avirulence gene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Cladosporium fulvum Avr4 protects fungal cell walls against hydrolysis by plant chitinases accumulating during infection

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Crystal Structures of Flax Rust Avirulence Proteins AvrL567-A and -D Reveal Details of the Structural Basis for Flax Disease Resistance Specificity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

RXLR effector reservoir in two Phytophthora species is dominated by a single rapidly evolving superfamily with more than 700 members

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Evolution of the cutinase gene family: evidence for lateral gene transfer of a candidate Phytophthora virulence factor

31 March 2020

1 reference

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Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes

31 March 2020

1 reference

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Emergence of a new disease as a result of interspecific virulence gene transfer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Amplification generates modular diversity at an avirulence locus in the pathogen Phytophthora

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Causes and consequences of genome expansion in fungi

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Species selection maintains self-incompatibility

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

The deep roots of eukaryotes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Oomycete-plant coevolution: recent advances and future prospects

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Oomycete Genetics and Genomics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Common infection strategies of pathogenic eukaryotes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

The spores of Phytophthora: weapons of the plant destroyer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Late Blight of Potato and Tomato in the Genomics Era

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Phytophthora infestans: the plant (and R gene) destroyer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Pathogen population genetics, evolutionary potential, and durable resistance

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Emerging concepts in effector biology of plant-associated organisms.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Ten things to know about oomycete effectors.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Groovy times: filamentous pathogen effectors revealed

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Recent developments in effector biology of filamentous plant pathogens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

31 March 2020

The plant immune system

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Plant immunity: towards an integrated view of plant-pathogen interactions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Conserved C-terminal motifs required for avirulence and suppression of cell death by Phytophthora sojae effector Avr1b

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

Analysis of polymorphism and transcription of the effector gene Avr1b in Phytophthora sojae isolates from China virulent to Rps1b.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO2790

31 March 2020

1 reference

https://pubmed.ncbi.nlm.nih.gov/22565130

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12 December 2020

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Identifiers

DOI

10.1038/NRMICRO2790

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PubMed ID

22565130

Dimensions Publication ID

1 August 2017

1015232358

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release_xc5kbpmc25curbt52o35x7pbxm

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https://api.fatcat.wiki/v0/release/xc5kbpmc25curbt52o35x7pbxm

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24 November 2022

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PubMed ID

22565130

1 reference

PubMed ID

22565130