Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies (Q27644515)

Ryan S Roark

25

0 references

Ryan P. Staupe

Ryan P Staupe

11

0 references

Jinal Bhiman

Jinal N Bhiman

5

0 references

Constantinos Kurt Wibmer

Constantinos Kurt Wibmer

30

0 references

Jason Gorman

Jason Gorman

3

0 references

Penny Moore

Penny L Moore

4

0 references

Salim Abdool Karim

Salim S Abdool Karim

42

0 references

Ian Andrew Wilson

37

Ian A Wilson

0 references

John R. Mascola

46

John R Mascola

0 references

James C Mullikin

34

James C Mullikin

0 references

Lynn Morris

43

Lynn Morris

0 references

Carolyn Williamson

41

Carolyn Williamson

0 references

Cinque Soto

29

Cinque Soto

0 references

Peter D. Kwong

44

Peter D Kwong

0 references

Brandon J DeKosky

6

Brandon J DeKosky

0 references

Andrew B Ward

39

Andrew B Ward

0 references

Rogier W Sanders

36

Rogier W Sanders

0 references

John P. Moore

38

John P Moore

0 references

Nicole Doria-Rose

1

Nicole A Doria-Rose

0 references

Ivelin S. Georgiev

8

Ivelin S Georgiev

0 references

Stephen D Schmidt

27

Stephen D Schmidt

0 references

Mark K. Louder

20

Mark K Louder

0 references

James M Binley

35

James M Binley

0 references

Nancy S Longo

21

Nancy S Longo

0 references

Sijy O'Dell

24

Sijy O'Dell

0 references

Chaim A. Schramm

2

Chaim A Schramm

0 references

Yongping Yang

31

Yongping Yang

0 references

Aliaksandr Druz

16

Aliaksandr Druz

0 references

Marie Pancera

10

Marie Pancera

0 references

Ema T. Crooks

14

Ema T Crooks

0 references

Krisha McKee

22

Krisha McKee

0 references

Michael J. Ernandes

7

Michael J Ernandes

0 references

Han Altae-Tran

12

Han R Altae-Tran

0 references

Rebecca S Rudicell

26

Rebecca S Rudicell

0 references

Nigel Garrett

17

Nigel J Garrett

0 references

Daniel J Sheward

28

Daniel J Sheward

0 references

Molati Nonyane

23

Molati Nonyane

0 references

Robert Bailer

13

Robert T Bailer

0 references

author name string

Helen J Kim

9

0 references

Albert Cupo

15

0 references

Kam H Hoi

18

0 references

Rui Kong

19

0 references

Zhenhai Zhang

32

0 references

George Georgiou

describes a project that uses

40

0 references

language of work or name

English

0 references

publication date

1 May 2014

0 references

published in

Nature

0 references

volume

509

0 references

page(s)

55-62

0 references

issue

7498

0 references

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4395007

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Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target

7 April 2017

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7 April 2017

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Predominant autoantibody production by early human B cell precursors

7 April 2017

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Rapid evolution of the neutralizing antibody response to HIV type 1 infection

7 April 2017

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Isolation of human monoclonal antibodies from peripheral blood B cells

7 April 2017

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Mining the antibodyome for HIV-1-neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains

29 September 2017

1 reference

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Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9.

29 September 2017

1 reference

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Multiple pathways of escape from HIV broadly cross-neutralizing V2-dependent antibodies

29 September 2017

1 reference

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High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Antigenicity and Immunogenicity in HIV-1 Antibody-Based Vaccine Design

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Somatic Populations of PGT135-137 HIV-1-Neutralizing Antibodies Identified by 454 Pyrosequencing and Bioinformatics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Detecting individual sites subject to episodic diversifying selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

A short segment of the HIV-1 gp120 V1/V2 region is a major determinant of resistance to V1/V2 neutralizing antibodies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Human peripheral blood antibodies with long HCDR3s are established primarily at original recombination using a limited subset of germline genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

B-cell-lineage immunogen design in vaccine development with HIV-1 as a case study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

HIV-1 virus-like particles bearing pure env trimers expose neutralizing epitopes but occlude nonneutralizing epitopes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Analysis of a clonal lineage of HIV-1 envelope V2/V3 conformational epitope-specific broadly neutralizing antibodies and their inferred unmutated common ancestors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

The neutralization breadth of HIV-1 develops incrementally over four years and is associated with CD4+ T cell decline and high viral load during acute infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Potent and broad neutralization of HIV-1 subtype C by plasma antibodies targeting a quaternary epitope including residues in the V2 loop

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

The B cell response is redundant and highly focused on V1V2 during early subtype C infection in a Zambian seroconverter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

A limited number of antibody specificities mediate broad and potent serum neutralization in selected HIV-1 infected individuals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

A clustering approach to multireference alignment of single-particle projections in electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

A rev1-vpu polymorphism unique to HIV-1 subtype A and C strains impairs envelope glycoprotein expression from rev-vpu-env cassettes and reduces virion infectivity in pseudotyping assays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Breadth of human immunodeficiency virus-specific neutralizing activity in sera: clustering analysis and association with clinical variables

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Breadth of neutralizing antibody response to human immunodeficiency virus type 1 is affected by factors early in infection but does not influence disease progression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Measuring HIV neutralization in a luciferase reporter gene assay

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Establishing a cohort at high risk of HIV infection in South Africa: challenges and experiences of the CAPRISA 002 acute infection study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Efficient generation of monoclonal antibodies from single human B cells by single cell RT-PCR and expression vector cloning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Efficient protein boosting after plasmid DNA or recombinant adenovirus immunization with HIV-1 vaccine constructs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Cardiolipin polyspecific autoreactivity in two broadly neutralizing HIV-1 antibodies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Selective recognition of oligomeric HIV-1 primary isolate envelope glycoproteins by potently neutralizing ligands requires efficient precursor cleavage.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Clustering of highly homologous sequences to reduce the size of large protein databases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Loop modeling: Sampling, filtering, and scoring

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

High-throughput antibody sequencing reveals genetic evidence of global regulation of the naïve and memory repertoires that extends across individuals.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4395007

Processing of X-ray diffraction data collected in oscillation mode

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24590074

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

General time-reversible distances with unequal rates across sites: mixing gamma and inverse Gaussian distributions with invariant sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24590074

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE13036

1 reference

Dimensions Publication ID

190509

1032264965

0 references

Fatcat ID

release_az5tguuuvjeaxbnbfleb4baa3u

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/az5tguuuvjeaxbnbfleb4baa3u

mapped directly with Wikidata item

24 November 2022

based on heuristic

190509

1 reference

1 reference

1 reference