Guanidinoneomycin B Recognition of an HIV-1 RNA Helix (Q27649212)

1

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Vincenzo Venditti

2

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Neri Niccolai

3

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Lev Elson-Schwab

4

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Yitzhak Tor

5

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Samuel E Butcher

Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding

6

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publication date

4 January 2008

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published in

ChemBioChem

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volume

9

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issue

1

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page(s)

93-102

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cites work

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Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA

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Aminoglycoside-arginine conjugates that bind TAR RNA: synthesis, characterization, and antiviral activity

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Importance of ribosomal frameshifting for human immunodeficiency virus type 1 particle assembly and replication

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Interaction of antibiotics with functional sites in 16S ribosomal RNA

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The pattern of distribution of amino groups modulates the structure and dynamics of natural aminoglycosides: implications for RNA recognition.

7 April 2017

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Toward the understanding of MNEI sweetness from hydration map surfaces

29 September 2017

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Solution nuclear magnetic resonance spectroscopy techniques for probing intermolecular interactions

29 September 2017

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Three-dimensional computation of atom depth in complex molecular structures.

29 September 2017

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mRNA helicase activity of the ribosome

29 September 2017

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Interactions of the KWK6 cationic peptide with short nucleic acid oligomers: demonstration of large Coulombic end effects on binding at 0.1-0.2 M salt

29 September 2017

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NMR studies of protein hydration and TEMPOL accessibility.

29 September 2017

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Comparison of X-ray crystal structure of the 30S subunit-antibiotic complex with NMR structure of decoding site oligonucleotide-paromomycin complex

29 September 2017

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Analysis of natural variants of the human immunodeficiency virus type 1 gag-pol frameshift stem-loop structure

29 September 2017

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Structure-based computational database screening, in vitro assay, and NMR assessment of compounds that target TAR RNA.

29 September 2017

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Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics

29 September 2017

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NMR studies of protein surface accessibility.

29 September 2017

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Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2.

29 September 2017

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29 September 2017

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29 September 2017

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Aminoglycoside-RNA interactions

29 September 2017

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Determinants of aminoglycoside-binding specificity for rRNA by using mass spectrometry

29 September 2017

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29 September 2017

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29 September 2017

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Probing protein structure by solvent perturbation of NMR spectra: the surface accessibility of bovine pancreatic trypsin inhibitor

29 September 2017

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Peptidyl-transferase inhibitors have antiviral properties by altering programmed -1 ribosomal frameshifting efficiencies: development of model systems

29 September 2017

1 reference

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Overexpression of the gag-pol precursor from human immunodeficiency virus type 1 proviral genomes results in efficient proteolytic processing in the absence of virion production

29 September 2017

1 reference

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Human immunodeficiency virus type 1 gag-pol frameshifting is dependent on downstream mRNA secondary structure: demonstration by expression in vivo

29 September 2017

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TAR-RNA recognition by a novel cyclic aminoglycoside analogue.

29 September 2017

1 reference

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Efficiency of a programmed -1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M.

2 June 2018

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Sequence-specific recognition of the major groove of RNA by deoxystreptamine.

2 June 2018

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Determination of metal ion binding sites within the hairpin ribozyme domains by NMR.

2 June 2018

1 reference

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tRNA(Phe) binds aminoglycoside antibiotics

2 June 2018

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Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude.

2 June 2018

1 reference

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In vivo HIV-1 frameshifting efficiency is directly related to the stability of the stem-loop stimulatory signal.

2 June 2018

1 reference

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Characterization of ribosomal frameshifting in HIV-1 gag-pol expression

2 June 2018

1 reference

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Decreasing the frameshift efficiency translates into an equivalent reduction of the replication of the human immunodeficiency virus type 1.

2 June 2018

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RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex

27 November 2018

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New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes

27 November 2018

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Cellular Uptake of Aminoglycosides, Guanidinoglycosides, and Poly-arginine

27 November 2018

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27 November 2018

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Direct observation of aminoglycoside-RNA interactions by surface plasmon resonance

27 November 2018

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Synthesis and anti-HIV activity of guanidinoglycosides

27 November 2018

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Deciphering RNA recognition: aminoglycoside binding to the hammerhead ribozyme

27 November 2018

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Structure-based discovery of ligands targeted to the RNA double helix.

27 November 2018

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Binding of neomycin-class aminoglycoside antibiotics to the A-site of 16 S rRNA

27 November 2018

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12 December 2020

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

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12 December 2020

Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA

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12 December 2020

Extracting thermodynamic data from equilibrium melting curves for oligonucleotide order-disorder transitions

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12 December 2020

Solution structure and thermodynamic investigation of the HIV-1 frameshift inducing element

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12 December 2020

Neomycin inhibition of the hammerhead ribozyme involves ionic interactions

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12 December 2020