Unexpected A-form formation of 4'-thioDNA in solution, revealed by NMR, and the implications as to the mechanism of nuclease resistance (Q27649791)

1

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Takako Ohyama

2

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Masashi Inada

3

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Naonori Inoue

4

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Noriaki Minakawa

5

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Akira Matsuda

6

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Masato Katahira

Syntheses of 4'-thioribonucleosides and thermodynamic stability and crystal structure of RNA oligomers with incorporated 4'-thiocytosine

7

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language of work or name

English

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publication date

April 2008

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published in

Nucleic Acids Research

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volume

36

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issue

6

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page(s)

1805-12

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cites work

1 reference

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Intramolecular Higher Order Packing of Parallel Quadruplexes Comprising a G:G:G:G Tetrad and a G(:A):G(:A):G(:A):G Heptad of GGA Triplet Repeat DNA

20 March 2017

1 reference

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Structural basis of the highly efficient trapping of the HIV Tat protein by an RNA aptamer

20 March 2017

1 reference

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An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad, and its dimeric interaction

20 March 2017

1 reference

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Phosphorothioate substitution can substantially alter RNA conformation

20 March 2017

1 reference

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DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase

20 March 2017

1 reference

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Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC)

20 March 2017

1 reference

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The crystal structure analysis of d(CGCGAASSCGCG)2, a synthetic DNA dodecamer duplex containing four 4'-thio-2'-deoxythymidine nucleotides

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330235

The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

20 March 2017

1 reference

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330235

The Xplor-NIH NMR molecular structure determination package

20 March 2017

1 reference

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

1 reference

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

20 March 2017

1 reference

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The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

20 March 2017

1 reference

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Investigation of some properties of oligodeoxynucleotides containing 4'-thio-2'-deoxynucleotides: duplex hybridization and nuclease sensitivity

7 April 2017

1 reference

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Synthesis and properties of oligodeoxynucleotides containing the analogue 2'-deoxy-4'-thiothymidine

29 September 2017

1 reference

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Mapping tRNA structure in solution using double-strand-specific ribonuclease V1 from cobra venom

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330235

Nucleic acids and nuclear magnetic resonance

29 September 2017

1 reference

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CD spectra and some properties of deoxyoligonucleotide duplexes having a C:G terminus (nucleosides and nucleotides. Part 69).

29 September 2017

1 reference

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Deoxynucleotide-containing oligoribonucleotide duplexes: stability and susceptibility to RNase V1 and RNase H.

29 September 2017

1 reference

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X-ray structure of the DNase I-d(GGTATACC)2 complex at 2.3 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330235

Synthesis and properties of 4'-ThioDNA: unexpected RNA-like behavior of 4'-ThioDNA.

29 September 2017

1 reference

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A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams. 1991.

2 June 2018

1 reference

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Practical synthesis of 2'-deoxy-4'-thioribonucleosides: substrates for the synthesis of 4'-thioDNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330235

Optimised parameters for A-DNA and B-DNA

27 November 2018

1 reference

12 December 2020

Structural details of double-helix observed for DNAs containing alternating purine and pyrimidine sequences

1 reference

12 December 2020

Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases

1 reference

12 December 2020

Ordered water structure around a B-DNA dodecamer. A quantitative study

1 reference

12 December 2020

Solution structure of d-GAATTCGAATTC by 2D NMR. A new approach to determination of sugar geometries in DNA segments

1 reference

12 December 2020

Determination of nucleic acid backbone conformation by 1H NMR

1 reference

12 December 2020

4'-Thio-RNA: synthesis of mixed base 4'-thio-oligoribonucleotides, nuclease resistance, and base pairing properties with complementary single and double strand

1 reference

12 December 2020