Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance (Q27652842)

inferred from title

X-ray crystallography

1 reference

Isabelle Lebars

1

0 references

Pierre Legrand

2

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Ahissan Aimé

3

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Noël Pinaud

4

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Sébastien Fribourg

5

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Carmelo Di Primo

Structural insights into amino acid binding and gene control by a lysine riboswitch

6

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language of work or name

English

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publication date

December 2008

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published in

Nucleic Acids Research

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volume

36

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issue

22

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page(s)

7146-56

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cites work

1 reference

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20 March 2017

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Crystal structure of the lysine riboswitch regulatory mRNA element

20 March 2017

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NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer

20 March 2017

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Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism

20 March 2017

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A new NMR solution structure of the SL1 HIV-1Lai loop-loop dimer

20 March 2017

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Crystal structures of coaxially stacked kissing complexes of the HIV-1 RNA dimerization initiation site

20 March 2017

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

20 March 2017

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A retroviral RNA kissing complex containing only two G⋅C base pairs

20 March 2017

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Crystal structures of two plasmid copy control related RNA duplexes: An 18 base pair duplex at 1.20 A resolution and a 19 base pair duplex at 1.55 A resolution

20 March 2017

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The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence

20 March 2017

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Structure of the dimer initiation complex of HIV-1 genomic RNA

20 March 2017

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Stabilizing effects of the RNA 2'-substituent: crystal structure of an oligodeoxynucleotide duplex containing 2'-O-methylated adenosines

20 March 2017

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The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement

20 March 2017

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Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals

20 March 2017

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20 March 2017

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Use of TLS parameters to model anisotropic displacements in macromolecular refinement

20 March 2017

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Remarks about protein structure precision

29 September 2017

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MOLMOL: a program for display and analysis of macromolecular structures

20 March 2017

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Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

20 March 2017

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Inhibition of rot translation by RNAIII, a key feature of agr function

20 March 2017

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Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers

20 March 2017

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Recognition elements in rRNA for the tylosin resistance methyltransferase RlmA(II).

20 March 2017

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Unusual mechanical stability of a minimal RNA kissing complex

29 September 2017

1 reference

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Aptamers targeted to an RNA hairpin show improved specificity compared to that of complementary oligonucleotides

29 September 2017

1 reference

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Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer

29 September 2017

1 reference

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RNA loop-loop interactions as dynamic functional motifs.

29 September 2017

1 reference

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Loop-loop interaction of HIV-1 TAR RNA with N3'-->P5' deoxyphosphoramidate aptamers inhibits in vitro Tat-mediated transcription

29 September 2017

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Is a closing "GA pair" a rule for stable loop-loop RNA complexes?

29 September 2017

1 reference

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Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting

29 September 2017

1 reference

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In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.

29 September 2017

1 reference

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Dimerization of HIV-1 genomic RNA of subtypes A and B: RNA loop structure and magnesium binding

29 September 2017

1 reference

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DNA aptamers selected against the HIV-1 trans-activation-responsive RNA element form RNA-DNA kissing complexes

29 September 2017

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Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*

29 September 2017

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Interpreting kinetic rate constants from optical biosensor data recorded on a decaying surface

29 September 2017

1 reference

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Solution studies of the dimerization initiation site of HIV-1 genomic RNA.

29 September 2017

1 reference

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A loop-loop "kissing" complex is the essential part of the dimer linkage of genomic HIV-1 RNA

29 September 2017

1 reference

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Two- and three-dimensional HCN experiments for correlating base and sugar resonances in 15N,13C-labeled RNA oligonucleotides

29 September 2017

1 reference

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A discrete element 3' of human immunodeficiency virus 1 (HIV-1) and HIV-2 mRNA initiation sites mediates transcriptional activation by an HIV trans activator

29 September 2017

1 reference

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29 September 2017

1 reference

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Evaluation of 2'-modified oligonucleotides containing 2'-deoxy gaps as antisense inhibitors of gene expression.

2 June 2018

1 reference

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Determinants of RNA hairpin loop-loop complex stability.

27 November 2018

1 reference

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Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein

27 November 2018

1 reference

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fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

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1 reference

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2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription

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[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

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Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea

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12 December 2020