Crystal structure of DNA gyrase B' domain sheds lights on the mechanism for T-segment navigation (Q27656386)

2

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Wei Liu

3

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Deyu Zhu

4

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Yonglin Hu

5

0 references

Jiaoyu Deng

6

0 references

Xian-En Zhang

7

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Lijun Bi

8

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Da-Cheng Wang

Structural basis for gate-DNA recognition and bending by type IIA topoisomerases

9

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language of work or name

English

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publication date

September 2009

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published in

Nucleic Acids Research

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volume

37

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issue

17

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page(s)

5908-16

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Inhibition of archaeal growth and DNA topoisomerase VI activities by the Hsp90 inhibitor radicicol

20 March 2017

1 reference

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DNA topoisomerases: structure, function, and mechanism

20 March 2017

1 reference

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Dimerization of Escherichia coli DNA-gyrase B provides a structural mechanism for activating the ATPase catalytic center

20 March 2017

1 reference

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Mutagenesis of E477 or K505 in the B' domain of human topoisomerase II beta increases the requirement for magnesium ions during strand passage

20 March 2017

1 reference

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Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11

20 March 2017

1 reference

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Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands

20 March 2017

1 reference

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Crystal structure of the breakage-reunion domain of DNA gyrase

20 March 2017

1 reference

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Structure and mechanism of DNA topoisomerase II

20 March 2017

1 reference

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Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Coot: model-building tools for molecular graphics

20 March 2017

1 reference

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The CCP4 suite: programs for protein crystallography

20 March 2017

1 reference

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Automated MAD and MIR structure solution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

1 reference

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20 March 2017

1 reference

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Mycobacterium tuberculosis DNA gyrase as a target for drug discovery

7 April 2017

1 reference

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Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism.

29 September 2017

1 reference

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The key DNA-binding residues in the C-terminal domain of Mycobacterium tuberculosis DNA gyrase A subunit (GyrA).

29 September 2017

1 reference

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Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases

29 September 2017

1 reference

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29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Quinolone-binding pocket of DNA gyrase: role of GyrB.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Reconstitution of DNA topoisomerase VI of the thermophilic archaeon Sulfolobus shibatae from subunits separately overexpressed in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

DNA gyrase as a drug target

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Crystal structure of an N-terminal fragment of the DNA gyrase B protein.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Identification of active site residues in the "GyrA" half of yeast DNA topoisomerase II.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

A superhelical spiral in the Escherichia coli DNA gyrase A C-terminal domain imparts unidirectional supercoiling bias.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Small-angle X-ray scattering reveals the solution structure of the full-length DNA gyrase a subunit.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Site-directed mutagenesis using a single mutagenic oligonucleotide and DpnI digestion of template DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: a proposed two metal-ion mechanism

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Mutational analysis of Escherichia coli topoisomerase IV. III. Identification of a region of parE involved in covalent catalysis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Role of the divalent cation in topoisomerase II mediated reactions.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2761264

Purification of a DNA topoisomerase II from the hyperthermophilic archaeon Sulfolobus shibatae. A thermostable enzyme with both bacterial and eucaryal features

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19596812

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modular Structure of the Full-Length DNA Gyrase B Subunit Revealed by Small-Angle X-Ray Scattering

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19596812

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The acidic triad conserved in type IA DNA topoisomerases is required for binding of Mg(II) and subsequent conformational change

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19596812

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP586

1 reference

1 reference

1 reference

PubMed publication ID

19596812

1 reference