Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity (Q27667221)

DNA-directed RNA polymerase II core subunit RPB2 YOR151C

GOA release 2020-03-11

1 reference

DNA-directed RNA polymerase core subunit RPB8 YOR224C

GOA release 2020-03-11

1 reference

RNA polymerase and transcription elongation factor Spt4/5 complex structure

GOA release 2020-03-11

4

Patrick Cramer

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author name string

Fuensanta W Martinez-Rucobo

series ordinal

1

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Sarah Sainsbury

series ordinal

2

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Alan C M Cheung

series ordinal

3

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language of work or name

English

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publication date

6 April 2011

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published in

The EMBO Journal

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volume

30

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issue

7

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page(s)

1302-10

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cites work

1 reference

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Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein

20 March 2017

1 reference

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A NusE:NusG complex links transcription and translation

20 March 2017

1 reference

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Spt4/5 stimulates transcription elongation through the RNA polymerase clamp coiled-coil motif

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

MolProbity: all-atom structure validation for macromolecular crystallography

20 March 2017

1 reference

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Structure of an RNA Polymerase II-TFIIB Complex and the Transcription Initiation Mechanism

20 March 2017

1 reference

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RNA polymerase II-TFIIB structure and mechanism of transcription initiation

20 March 2017

1 reference

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Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA

20 March 2017

1 reference

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Two Structurally Independent Domains of E. coli NusG Create Regulatory Plasticity via Distinct Interactions with RNA Polymerase and Regulators

20 March 2017

1 reference

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Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure

20 March 2017

1 reference

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The X-ray crystal structure of RNA polymerase from Archaea

20 March 2017

1 reference

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Structural basis for transcription elongation by bacterial RNA polymerase

20 March 2017

1 reference

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A negative elongation factor for human RNA polymerase II inhibits the anti-arrest transcript-cleavage factor TFIIS.

20 March 2017

1 reference

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Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage

20 March 2017

1 reference

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A spring-loaded state of NusG in its functional cycle is suggested by X-ray crystallography and supported by site-directed mutants

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Electrostatics of nanosystems: application to microtubules and the ribosome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Transcription elongation factor hSPT5 stimulates mRNA capping

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

The integration of macromolecular diffraction data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Likelihood-enhanced fast translation functions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Coot: model-building tools for molecular graphics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

The CCP4 suite: programs for protein crystallography

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Uniform transitions of the general RNA polymerase II transcription complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Structures of complete RNA polymerase II and its subcomplex, Rpb4/7.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Structure of eukaryotic RNA polymerases

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Activation-induced cytidine deaminase targets DNA at sites of RNA polymerase II stalling by interaction with Spt5

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Cycling through transcription with the RNA polymerase F/E (RPB4/7) complex: structure, function and evolution of archaeal RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

A dual interface determines the recognition of RNA polymerase II by RNA capping enzyme.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Functional analysis of Thermus thermophilus transcription factor NusG

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Functional regions of the N-terminal domain of the antiterminator RfaH.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Repression of RNA polymerase II elongation in vivo is critically dependent on the C-terminus of Spt5.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Phosphorylation of the transcription elongation factor Spt5 by yeast Bur1 kinase stimulates recruitment of the PAF complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Core structure of the yeast spt4-spt5 complex: a conserved module for regulation of transcription elongation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Analysis of factor interactions with RNA polymerase II elongation complexes using a new electrophoretic mobility shift assay

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Termination factor Rho and its cofactors NusA and NusG silence foreign DNA in E. coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Structure of an archaeal RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Spt4 modulates Rad26 requirement in transcription-coupled nucleotide excision repair

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Architecture of RNA polymerase II and implications for the transcription mechanism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro

29 September 2017

1 reference

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Cooperation between translating ribosomes and RNA polymerase in transcription elongation

29 September 2017

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Nano positioning system reveals the course of upstream and nontemplate DNA within the RNA polymerase II elongation complex

2 June 2018

1 reference

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Requirement for E. coli NusG protein in factor-dependent transcription termination

2 June 2018

1 reference

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Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase beta' subunit.

2 June 2018

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A regulator of transcriptional elongation controls vertebrate neuronal development

21 January 2018

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https://api.crossref.org/works/10.1038%2FEMBOJ.2011.64

Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus

21 January 2018

1 reference

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RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2011.64

Collective motions of RNA polymerases. Analysis of core enzyme, elongation complex and holoenzyme.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3094117

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21386817

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/EMBOJ.2011.64

1 reference

release_z3j5wttwwres5csbfkqremlaey

894852

Fatcat ID

0 references

894852

1 reference

1 reference

1 reference