Structural characterization and inhibition of the Plasmodium Atg8–Atg3 interaction (Q27673186)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Structural characterization and inhibition of the Plasmodium Atg8-Atg3 interaction (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

autophagy-related protein 3, putative

13 February 2020

main subject

structural biology

0 references

1 reference

GeneDB

autophagy-related protein 8

11 September 2018

1 reference

11 September 2018

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Rhoel Dinglasan

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

David R. Colquhoun

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Jürgen Bosch

10

1 reference

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13 February 2020

author name string

Adelaide U P Hain

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Ryan R Weltzer

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Bamini Jayabalasingham

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Holly Hammond

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

David R M Graham

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Isabelle Coppens

9

1 reference

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13 February 2020

publication date

13 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

Journal of Structural Biology

13 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

180

1 reference

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13 February 2020

issue

3

1 reference

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13 February 2020

page(s)

551-562

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

13 February 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3496014/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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Structural basis of Atg8 activation by a homodimeric E1, Atg7

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Characterization of the interaction of GABARAPL-1 with the LIR motif of NBR1

20 March 2017

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Targeting protein-protein interactions for parasite control

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Selective inhibition of BET bromodomains

20 March 2017

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The NMR structure of the autophagy-related protein Atg8

20 March 2017

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Structural basis of target recognition by Atg8/LC3 during selective autophagy

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Structural basis for sorting mechanism of p62 in selective autophagy

20 March 2017

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Fragment-based discovery of mexiletine derivatives as orally bioavailable inhibitors of urokinase-type plasminogen activator

20 March 2017

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Application of fragment-based lead generation to the discovery of novel, cyclic amidine beta-secretase inhibitors with nanomolar potency, cellular activity, and high ligand efficiency

20 March 2017

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Discovery of a novel warhead against beta-secretase through fragment-based lead generation

20 March 2017

1 reference

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The closed MTIP-myosin A-tail complex from the malaria parasite invasion machinery

20 March 2017

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Application of fragment screening by X-ray crystallography to beta-secretase

20 March 2017

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The X-ray crystal structure and putative ligand-derived peptide binding properties of gamma-aminobutyric acid receptor type A receptor-associated protein

20 March 2017

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Overexpression, purification, and crystal structure of native ER alpha LBD

20 March 2017

1 reference

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Structure of GATE-16, membrane transport modulator and mammalian ortholog of autophagocytosis factor Aut7p

20 March 2017

1 reference

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Molecular replacement with MOLREP

20 March 2017

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Phasercrystallographic software

20 March 2017

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Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

20 March 2017

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Autophagy in the Pathogenesis of Disease

20 March 2017

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BALBES: a molecular-replacement pipeline

20 March 2017

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Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Coot: model-building tools for molecular graphics

20 March 2017

1 reference

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

20 March 2017

1 reference

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20 March 2017

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Autophagy in Apicomplexa: a life sustaining death mechanism?

20 March 2017

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The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy

20 March 2017

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A ubiquitin-like system mediates protein lipidation

20 March 2017

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A protein conjugation system essential for autophagy

20 March 2017

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Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

20 March 2017

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Autophagy protein Atg3 is essential for maintaining mitochondrial integrity and for normal intracellular development of Toxoplasma gondii tachyzoites

20 March 2017

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Discovery of gene function by expression profiling of the malaria parasite life cycle

20 March 2017

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7 April 2017

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Eaten alive: a history of macroautophagy

7 April 2017

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7 April 2017

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Which roles for autophagy in Toxoplasma gondii and related apicomplexan parasites?

7 April 2017

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Phase II study of single-agent navitoclax (ABT-263) and biomarker correlates in patients with relapsed small cell lung cancer

29 September 2017

1 reference

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Ookinete-interacting proteins on the microvillar surface are partitioned into detergent resistant membranes of Anopheles gambiae midguts

29 September 2017

1 reference

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Autophagy in parasitic protists: unique features and drug targets

29 September 2017

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29 September 2017

Autophagy in protists.

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Application of protein engineering to enhance crystallizability and improve crystal properties

29 September 2017

1 reference

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Atg8-family interacting motif crucial for selective autophagy

29 September 2017

1 reference

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Recent progress in fragment-based lead discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Mutation at the cargo-receptor binding site of Atg8 also affects its general autophagy regulation function

29 September 2017

1 reference

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Rapid site-directed domain scanning mutagenesis of enteropathogenic Escherichia coli espD

29 September 2017

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Fragment-based approaches to enzyme inhibition

29 September 2017

1 reference

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Structure of the MTIP-MyoA complex, a key component of the malaria parasite invasion motor

29 September 2017

1 reference

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Endosome sorting and autophagy are essential for differentiation and virulence of Leishmania major.

29 September 2017

1 reference

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Application of fragment screening and fragment linking to the discovery of novel thrombin inhibitors.

29 September 2017

1 reference

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A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design

29 September 2017

1 reference

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The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Protein structure prediction and analysis using the Robetta server.

29 September 2017

1 reference

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Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

29 September 2017

1 reference

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Autophagy during proliferation and encystation in the protozoan parasite Entamoeba invadens

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

FLIP-mediated autophagy regulation in cell death control

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Autophagy in protists: Examples of secondary loss, lineage-specific innovations, and the conundrum of remodeling a single mitochondrion

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Defining and computing optimum RMSD for gapped and weighted multiple-structure alignment.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Autophagy is involved in nutritional stress response and differentiation in Trypanosoma cruzi.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3496014

Protein-protein interaction inhibitors get into the groove

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22982544

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of a lead small-molecule inhibitor of the Aurora kinases using a structure-assisted, fragment-based approach

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22982544

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JSB.2012.09.001

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22982544%20AND%20SRC:MED&resulttype=core&format=json