Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily (Q27677856)

16

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Yury Patskovsky

12

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Rafael Toro

9

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Matthew P. Jacobson

18

Matthew P Jacobson

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Tiit Lukk

1

Tiit Lukk

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Heidi J. Imker

Heidi J Imker

5

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Patricia Babbitt

15

Patricia C Babbitt

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John A Gerlt

17

John A Gerlt

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author name string

Ayano Sakai

2

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Chakrapani Kalyanaraman

3

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Shoshana D Brown

4

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Ling Song

6

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Alexander A Fedorov

7

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Elena V Fedorov

8

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Brandan Hillerich

10

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Ronald Seidel

11

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Matthew W Vetting

13

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Satish K Nair

Proceedings of the National Academy of Sciences of the United States of America

14

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language of work or name

English

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publication date

13 March 2012

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published in

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volume

109

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issue

11

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page(s)

4122-7

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describes a project that uses

Cytoscape

1 reference

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis ,

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Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening

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Prediction and assignment of function for a divergent N-succinyl amino acid racemase

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Structure-based activity prediction for an enzyme of unknown function

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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Evolution of enzymatic activities in the enolase superfamily: crystal structures of the L-Ala-D/L-Glu epimerases from Escherichia coli and Bacillus subtilis

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Melamine deaminase and atrazine chlorohydrolase: 98 percent identical but functionally different

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Integration of biological networks and gene expression data using Cytoscape

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Divergent evolution in enolase superfamily: strategies for assigning functions

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Modelling substrate specificity and enantioselectivity for lipases and esterases by substrate-imprinted docking

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Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes

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Evolution of structure and function in the o-succinylbenzoate synthase/N-acylamino acid racemase family of the enolase superfamily

29 September 2017

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The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids

21 January 2018

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Molecular docking for substrate identification: the short-chain dehydrogenases/reductases

21 January 2018

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Evolution of enzymatic activities in the enolase superfamily: structure of a substrate-liganded complex of the L-Ala-D/L-Glu epimerase from Bacillus subtilis

21 January 2018

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Evolution of enzymatic activities in the enolase superfamily: N-succinylamino acid racemase and a new pathway for the irreversible conversion of D- to L-amino acids

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1073/PNAS.1112081109

1 reference

ADS bibcode

2012PNAS..109.4122L

0 references

1 reference

1 reference

PubMed publication ID

22392983

1 reference